miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27138 5' -58.6 NC_005832.1 + 1684 1.11 0.000862
Target:  5'- gUGCUCGUGAGGACCGGCGUAGACCCCu -3'
miRNA:   3'- -ACGAGCACUCCUGGCCGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 54735 0.67 0.661847
Target:  5'- cGCcugCGaGAGGACCGGCcu-GugCCUg -3'
miRNA:   3'- aCGa--GCaCUCCUGGCCGcauCugGGG- -5'
27138 5' -58.6 NC_005832.1 + 23154 0.67 0.702292
Target:  5'- gUGUcCGUGAguGGACaCGGUGacGGAUCCCu -3'
miRNA:   3'- -ACGaGCACU--CCUG-GCCGCa-UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 21084 0.66 0.722196
Target:  5'- gGCUgGUGAuuGCCGGggccCGUAGggacGCCCCg -3'
miRNA:   3'- aCGAgCACUccUGGCC----GCAUC----UGGGG- -5'
27138 5' -58.6 NC_005832.1 + 42263 0.66 0.722196
Target:  5'- gUGCcCGUG-GGACUGGUcuuuaAGGCCCUu -3'
miRNA:   3'- -ACGaGCACuCCUGGCCGca---UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 39442 0.66 0.722196
Target:  5'- gGUcCGUG-GGAgCGGC-UGGGCCUCa -3'
miRNA:   3'- aCGaGCACuCCUgGCCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 7532 0.66 0.757198
Target:  5'- gUGCUCGUucgucagGAGGgaccuccuggaccuGCUGGcCGUcAGACCCa -3'
miRNA:   3'- -ACGAGCA-------CUCC--------------UGGCC-GCA-UCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 32160 0.66 0.761007
Target:  5'- gGC-CG-GAGGAgCGGCGaggGGAgUCCa -3'
miRNA:   3'- aCGaGCaCUCCUgGCCGCa--UCUgGGG- -5'
27138 5' -58.6 NC_005832.1 + 25487 0.66 0.761007
Target:  5'- aUGUaCGUGAGGagaaaguaGCUGGCGauguuaaagGGuACCCCg -3'
miRNA:   3'- -ACGaGCACUCC--------UGGCCGCa--------UC-UGGGG- -5'
27138 5' -58.6 NC_005832.1 + 2653 0.68 0.631233
Target:  5'- uUGUcgCGgagGAGGGCCuguggacuauGGCGaGGACCCUg -3'
miRNA:   3'- -ACGa-GCa--CUCCUGG----------CCGCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 54810 0.68 0.600622
Target:  5'- gGC-CGacggGGGGACCGuCcUGGACCCCg -3'
miRNA:   3'- aCGaGCa---CUCCUGGCcGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 48113 0.74 0.321628
Target:  5'- gGCUgGUgagcugGAGGACUGGC-UGGGCCCUg -3'
miRNA:   3'- aCGAgCA------CUCCUGGCCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 98563 0.73 0.329001
Target:  5'- cGCUCaUGAgacaagaguacGGGCCGGCGUucacGGCCCUg -3'
miRNA:   3'- aCGAGcACU-----------CCUGGCCGCAu---CUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 43385 0.72 0.375826
Target:  5'- gGUUCGUGAGGAg-GGUGcUGGACCCa -3'
miRNA:   3'- aCGAGCACUCCUggCCGC-AUCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 67179 0.71 0.435863
Target:  5'- aGCUCGaggaggGGGGAUgGGCGUGGACa-- -3'
miRNA:   3'- aCGAGCa-----CUCCUGgCCGCAUCUGggg -5'
27138 5' -58.6 NC_005832.1 + 4873 0.71 0.435863
Target:  5'- cGCUCGUGAGG-CUGGU--AGACgCUCa -3'
miRNA:   3'- aCGAGCACUCCuGGCCGcaUCUG-GGG- -5'
27138 5' -58.6 NC_005832.1 + 45820 0.7 0.520494
Target:  5'- aGCUUGUaGAGGA-CGGCcauguacucUGGACCCCc -3'
miRNA:   3'- aCGAGCA-CUCCUgGCCGc--------AUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 2124 0.69 0.550157
Target:  5'- aUGCUCGUGGugcuGGCCcccauauucGGCG-AGGCCCUg -3'
miRNA:   3'- -ACGAGCACUc---CUGG---------CCGCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 39250 0.69 0.550157
Target:  5'- aUGUUCG-GcAGGGCaggcaggaaCGGCGUaaagGGGCCCCg -3'
miRNA:   3'- -ACGAGCaC-UCCUG---------GCCGCA----UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 55085 0.66 0.741792
Target:  5'- gGC-CGUGAGGaACCGGU--AGGCgUCg -3'
miRNA:   3'- aCGaGCACUCC-UGGCCGcaUCUGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.