miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 19662 0.68 0.82431
Target:  5'- gAGAC-CCGCAGCGGGuucgaaagccgcagcCGgCGCGGCGg -3'
miRNA:   3'- gUCUGuGGUGUCGUUU---------------GUgGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 32795 0.68 0.820721
Target:  5'- cCAGGCACCACGaCu-GCACCACcGCc -3'
miRNA:   3'- -GUCUGUGGUGUcGuuUGUGGUGcCGu -5'
27140 3' -53.6 NC_005832.1 + 79635 0.68 0.820721
Target:  5'- -uGAgACCaaACAGCAAguggacggccuACACCACuGGCAa -3'
miRNA:   3'- guCUgUGG--UGUCGUU-----------UGUGGUG-CCGU- -5'
27140 3' -53.6 NC_005832.1 + 42609 0.68 0.811616
Target:  5'- gAGACGCUGCGGa--GCACCugGGg- -3'
miRNA:   3'- gUCUGUGGUGUCguuUGUGGugCCgu -5'
27140 3' -53.6 NC_005832.1 + 53082 0.68 0.811616
Target:  5'- gAGGgGCgACGGCAcgGACACCgucuGCGGCc -3'
miRNA:   3'- gUCUgUGgUGUCGU--UUGUGG----UGCCGu -5'
27140 3' -53.6 NC_005832.1 + 2405 0.69 0.802331
Target:  5'- gAGACGgC-CAGC-AACGCCACcgGGCAa -3'
miRNA:   3'- gUCUGUgGuGUCGuUUGUGGUG--CCGU- -5'
27140 3' -53.6 NC_005832.1 + 95980 0.69 0.802331
Target:  5'- -uGACGgCGCGGCGAGagucuuuccCGCUGCGGCGg -3'
miRNA:   3'- guCUGUgGUGUCGUUU---------GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 68726 0.69 0.799511
Target:  5'- aAGGC-CCGCGGCGcACACugcauccgucaccgCACGGCGu -3'
miRNA:   3'- gUCUGuGGUGUCGUuUGUG--------------GUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 69166 0.69 0.795729
Target:  5'- aCGGACGCCACAGUcuuauagucccuuacCACUACGGgGa -3'
miRNA:   3'- -GUCUGUGGUGUCGuuu------------GUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 43347 0.69 0.78326
Target:  5'- gCGGACcCCGCAGCGccggaccACGCCAgccUGGCGg -3'
miRNA:   3'- -GUCUGuGGUGUCGUu------UGUGGU---GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 67180 0.69 0.78326
Target:  5'- uCAGGCcucuuuacgcCCGCGGCccuCGCCACGGCc -3'
miRNA:   3'- -GUCUGu---------GGUGUCGuuuGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 36211 0.69 0.773494
Target:  5'- gCGGACGCgGCGGCAGAgAaCGCGGgAg -3'
miRNA:   3'- -GUCUGUGgUGUCGUUUgUgGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 67580 0.69 0.773494
Target:  5'- gAGACuuCCACAGCcucuugagguGAGCcgccGCCGCGGCc -3'
miRNA:   3'- gUCUGu-GGUGUCG----------UUUG----UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 65626 0.69 0.773494
Target:  5'- -uGGgACCGgAGCAcaugGACACCACGGgGa -3'
miRNA:   3'- guCUgUGGUgUCGU----UUGUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 56917 0.69 0.763589
Target:  5'- aUAGACaacaucGCC-CAGCAGGCgcagGCCGCGGUg -3'
miRNA:   3'- -GUCUG------UGGuGUCGUUUG----UGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 47040 0.69 0.763589
Target:  5'- gGGGCACCACGuugucGUAGAUGCCG-GGCGa -3'
miRNA:   3'- gUCUGUGGUGU-----CGUUUGUGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 5097 0.69 0.753555
Target:  5'- gCAGAC-CCAacgccaGGCAGugGCCagACGGCGc -3'
miRNA:   3'- -GUCUGuGGUg-----UCGUUugUGG--UGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 6942 0.69 0.753555
Target:  5'- -cGACGgCACAGUgagGGACGCCAUGGgGa -3'
miRNA:   3'- guCUGUgGUGUCG---UUUGUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 70728 0.69 0.753555
Target:  5'- gAGAgGCCGCcGCA---GCCGCGGCu -3'
miRNA:   3'- gUCUgUGGUGuCGUuugUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 97242 0.7 0.743403
Target:  5'- aGGGcCACCGCGGCGGccuGCuCCAgGGCGu -3'
miRNA:   3'- gUCU-GUGGUGUCGUU---UGuGGUgCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.