Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 25918 | 0.68 | 0.838354 |
Target: 5'- -uGACgaACCACAGCAGcucCGCCgugACGGCu -3' miRNA: 3'- guCUG--UGGUGUCGUUu--GUGG---UGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 27786 | 0.7 | 0.733144 |
Target: 5'- gAGACACCACAGUuauCACCcucaAgGGUAg -3' miRNA: 3'- gUCUGUGGUGUCGuuuGUGG----UgCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 29917 | 0.66 | 0.900013 |
Target: 5'- aCAGAgGCCuggucugggGCGGCGGGgGCgGCGGUg -3' miRNA: 3'- -GUCUgUGG---------UGUCGUUUgUGgUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 30184 | 0.66 | 0.924866 |
Target: 5'- gCGGGCuCCGCAG-GAAUACCuguaACGGCu -3' miRNA: 3'- -GUCUGuGGUGUCgUUUGUGG----UGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 31683 | 0.67 | 0.878676 |
Target: 5'- cCAGAuCACCACGGCcguGgACCACGuCGu -3' miRNA: 3'- -GUCU-GUGGUGUCGuu-UgUGGUGCcGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 31883 | 0.66 | 0.899338 |
Target: 5'- gGGAUGCaGCAGCAAgggaugcACGCCAgGGUg -3' miRNA: 3'- gUCUGUGgUGUCGUU-------UGUGGUgCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 32138 | 0.72 | 0.605464 |
Target: 5'- ---uCACCACGGCAgacAACAUCAUGGCc -3' miRNA: 3'- gucuGUGGUGUCGU---UUGUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 32440 | 0.7 | 0.73726 |
Target: 5'- cCAGAgGCCGCgaggaGGCAGuACcuggccgcaaagucgGCCACGGCAg -3' miRNA: 3'- -GUCUgUGGUG-----UCGUU-UG---------------UGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 32795 | 0.68 | 0.820721 |
Target: 5'- cCAGGCACCACGaCu-GCACCACcGCc -3' miRNA: 3'- -GUCUGUGGUGUcGuuUGUGGUGcCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 36211 | 0.69 | 0.773494 |
Target: 5'- gCGGACGCgGCGGCAGAgAaCGCGGgAg -3' miRNA: 3'- -GUCUGUGgUGUCGUUUgUgGUGCCgU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 36624 | 0.66 | 0.921405 |
Target: 5'- -cGugGCCGCcggcuacgucuuuacGGCGGGCccCCACGGCu -3' miRNA: 3'- guCugUGGUG---------------UCGUUUGu-GGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 42609 | 0.68 | 0.811616 |
Target: 5'- gAGACGCUGCGGa--GCACCugGGg- -3' miRNA: 3'- gUCUGUGGUGUCguuUGUGGugCCgu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 43347 | 0.69 | 0.78326 |
Target: 5'- gCGGACcCCGCAGCGccggaccACGCCAgccUGGCGg -3' miRNA: 3'- -GUCUGuGGUGUCGUu------UGUGGU---GCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 44528 | 0.67 | 0.855158 |
Target: 5'- -cGGgACCGCGGCGuGCAagCugGGCAa -3' miRNA: 3'- guCUgUGGUGUCGUuUGUg-GugCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 46681 | 0.74 | 0.480439 |
Target: 5'- cCAGGCGCCu--GCAGGCGCaCACGGUc -3' miRNA: 3'- -GUCUGUGGuguCGUUUGUG-GUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 47040 | 0.69 | 0.763589 |
Target: 5'- gGGGCACCACGuugucGUAGAUGCCG-GGCGa -3' miRNA: 3'- gUCUGUGGUGU-----CGUUUGUGGUgCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 49322 | 0.66 | 0.919046 |
Target: 5'- aUAGACAUUuCcGCAAACGCCACGuCGg -3' miRNA: 3'- -GUCUGUGGuGuCGUUUGUGGUGCcGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 53082 | 0.68 | 0.811616 |
Target: 5'- gAGGgGCgACGGCAcgGACACCgucuGCGGCc -3' miRNA: 3'- gUCUgUGgUGUCGU--UUGUGG----UGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 53777 | 0.67 | 0.886038 |
Target: 5'- aAGGCACCgGCGGCc-GCGCUacacGCGGCc -3' miRNA: 3'- gUCUGUGG-UGUCGuuUGUGG----UGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 55540 | 0.66 | 0.908548 |
Target: 5'- cCAGuCcCCACGGCAggagacaucucggagGACGCCAcacugucCGGCAu -3' miRNA: 3'- -GUCuGuGGUGUCGU---------------UUGUGGU-------GCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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