miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 1016 0.72 0.602245
Target:  5'- cCGGGgGCUGCAGCGccuucacacccaggGGCACCuGCGGCAa -3'
miRNA:   3'- -GUCUgUGGUGUCGU--------------UUGUGG-UGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 1339 0.74 0.490438
Target:  5'- gCAGACugCACcGCGGAgguCGCCAUGGCc -3'
miRNA:   3'- -GUCUGugGUGuCGUUU---GUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 1717 0.72 0.608684
Target:  5'- gCAGGCccucaugGCCACAGCcgucaugcacggcgaGAugGCCAUGGCGc -3'
miRNA:   3'- -GUCUG-------UGGUGUCG---------------UUugUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 2176 0.78 0.303455
Target:  5'- gGGACGCCACggacgucaugguccAGCAAAuUGCCACGGCGg -3'
miRNA:   3'- gUCUGUGGUG--------------UCGUUU-GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 2405 0.69 0.802331
Target:  5'- gAGACGgC-CAGC-AACGCCACcgGGCAa -3'
miRNA:   3'- gUCUGUgGuGUCGuUUGUGGUG--CCGU- -5'
27140 3' -53.6 NC_005832.1 + 3753 0.66 0.906617
Target:  5'- gUAGACAgUcCGGCuacgucCACCAUGGCAg -3'
miRNA:   3'- -GUCUGUgGuGUCGuuu---GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 4132 1.09 0.003009
Target:  5'- gCAGACACCACAGCAAACACCACGGCAg -3'
miRNA:   3'- -GUCUGUGGUGUCGUUUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 4426 0.67 0.878676
Target:  5'- -cGACACUGCccUGAACGCUACGGCu -3'
miRNA:   3'- guCUGUGGUGucGUUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 5097 0.69 0.753555
Target:  5'- gCAGAC-CCAacgccaGGCAGugGCCagACGGCGc -3'
miRNA:   3'- -GUCUGuGGUg-----UCGUUugUGG--UGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 5598 0.67 0.885313
Target:  5'- aCGGGgACCACauggagacGGCGGACGgaucuccCCugGGCAg -3'
miRNA:   3'- -GUCUgUGGUG--------UCGUUUGU-------GGugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 6942 0.69 0.753555
Target:  5'- -cGACGgCACAGUgagGGACGCCAUGGgGa -3'
miRNA:   3'- guCUGUgGUGUCG---UUUGUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 9416 0.75 0.432036
Target:  5'- aCAGACAcCCGCAuaGGAUACUACGGCc -3'
miRNA:   3'- -GUCUGU-GGUGUcgUUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 12437 0.67 0.855158
Target:  5'- gCAGACACg--GGCuucuGCACCAUGGCc -3'
miRNA:   3'- -GUCUGUGgugUCGuu--UGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 14078 0.67 0.855158
Target:  5'- uGGACaaACCaACAGUAgaAGCGCCAgUGGCAc -3'
miRNA:   3'- gUCUG--UGG-UGUCGU--UUGUGGU-GCCGU- -5'
27140 3' -53.6 NC_005832.1 + 17340 0.68 0.838354
Target:  5'- uGGACGCCugGaGCGAguACACCAUGcCAg -3'
miRNA:   3'- gUCUGUGGugU-CGUU--UGUGGUGCcGU- -5'
27140 3' -53.6 NC_005832.1 + 18228 0.66 0.893152
Target:  5'- gAGACGCCcuguccagcaGCAGCAGcaGCGCCcUGuGCAg -3'
miRNA:   3'- gUCUGUGG----------UGUCGUU--UGUGGuGC-CGU- -5'
27140 3' -53.6 NC_005832.1 + 19662 0.68 0.82431
Target:  5'- gAGAC-CCGCAGCGGGuucgaaagccgcagcCGgCGCGGCGg -3'
miRNA:   3'- gUCUGuGGUGUCGUUU---------------GUgGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 19904 0.66 0.900013
Target:  5'- aCGGGCGCCGgGGgaAAGCGCCuCGGgGg -3'
miRNA:   3'- -GUCUGUGGUgUCg-UUUGUGGuGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 20095 0.66 0.919046
Target:  5'- uGGACAUgGCGGCAGAgGgCAaagacaGGCAc -3'
miRNA:   3'- gUCUGUGgUGUCGUUUgUgGUg-----CCGU- -5'
27140 3' -53.6 NC_005832.1 + 20161 0.66 0.906617
Target:  5'- uGGugGCgCACAGCAucgcguccgcCGCCugGGUg -3'
miRNA:   3'- gUCugUG-GUGUCGUuu--------GUGGugCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.