Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27140 | 3' | -53.6 | NC_005832.1 | + | 4132 | 1.09 | 0.003009 |
Target: 5'- gCAGACACCACAGCAAACACCACGGCAg -3' miRNA: 3'- -GUCUGUGGUGUCGUUUGUGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 56772 | 0.8 | 0.244507 |
Target: 5'- cCAGACACCGCGGCcuGCGCcugCugGGCGa -3' miRNA: 3'- -GUCUGUGGUGUCGuuUGUG---GugCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 2176 | 0.78 | 0.303455 |
Target: 5'- gGGACGCCACggacgucaugguccAGCAAAuUGCCACGGCGg -3' miRNA: 3'- gUCUGUGGUG--------------UCGUUU-GUGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 98518 | 0.78 | 0.313148 |
Target: 5'- aCAGACGCUGCGGCAGACAggUUAgGGCAg -3' miRNA: 3'- -GUCUGUGGUGUCGUUUGU--GGUgCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 97138 | 0.77 | 0.336404 |
Target: 5'- aGGGCaaagGCUGCGGCAGACGCCGUGGCAa -3' miRNA: 3'- gUCUG----UGGUGUCGUUUGUGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 97102 | 0.77 | 0.36933 |
Target: 5'- uCAGACGCCcuGgAGCAGGcCGCCGCGGUg -3' miRNA: 3'- -GUCUGUGG--UgUCGUUU-GUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 9416 | 0.75 | 0.432036 |
Target: 5'- aCAGACAcCCGCAuaGGAUACUACGGCc -3' miRNA: 3'- -GUCUGU-GGUGUcgUUUGUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 46681 | 0.74 | 0.480439 |
Target: 5'- cCAGGCGCCu--GCAGGCGCaCACGGUc -3' miRNA: 3'- -GUCUGUGGuguCGUUUGUG-GUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 1339 | 0.74 | 0.490438 |
Target: 5'- gCAGACugCACcGCGGAgguCGCCAUGGCc -3' miRNA: 3'- -GUCUGugGUGuCGUUU---GUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 90243 | 0.73 | 0.562802 |
Target: 5'- aGGGCACCAggaGGUucuuucugagGAACGCCGCGGCc -3' miRNA: 3'- gUCUGUGGUg--UCG----------UUUGUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 105020 | 0.73 | 0.573406 |
Target: 5'- aAGACGCCAUgAGgAggUACCAgGGCAu -3' miRNA: 3'- gUCUGUGGUG-UCgUuuGUGGUgCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 1016 | 0.72 | 0.602245 |
Target: 5'- cCGGGgGCUGCAGCGccuucacacccaggGGCACCuGCGGCAa -3' miRNA: 3'- -GUCUgUGGUGUCGU--------------UUGUGG-UGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 32138 | 0.72 | 0.605464 |
Target: 5'- ---uCACCACGGCAgacAACAUCAUGGCc -3' miRNA: 3'- gucuGUGGUGUCGU---UUGUGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 1717 | 0.72 | 0.608684 |
Target: 5'- gCAGGCccucaugGCCACAGCcgucaugcacggcgaGAugGCCAUGGCGc -3' miRNA: 3'- -GUCUG-------UGGUGUCG---------------UUugUGGUGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 71395 | 0.72 | 0.616204 |
Target: 5'- -cGACauugGCCAC-GCAGACACCgccGCGGCGu -3' miRNA: 3'- guCUG----UGGUGuCGUUUGUGG---UGCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 97705 | 0.72 | 0.637717 |
Target: 5'- gGGAUGCCGCGGCcgcCAUCugGGCu -3' miRNA: 3'- gUCUGUGGUGUCGuuuGUGGugCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 75895 | 0.71 | 0.669925 |
Target: 5'- uGGACcucucgcCCGCAGCGGACcUCACGGCc -3' miRNA: 3'- gUCUGu------GGUGUCGUUUGuGGUGCCGu -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 66392 | 0.7 | 0.712345 |
Target: 5'- uCAGACACCAgGGaCGGAgACgGgGGCAu -3' miRNA: 3'- -GUCUGUGGUgUC-GUUUgUGgUgCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 94184 | 0.7 | 0.712345 |
Target: 5'- aGGGcCGCCACGGCGuGCGCCuauaucuuuccCGGCAu -3' miRNA: 3'- gUCU-GUGGUGUCGUuUGUGGu----------GCCGU- -5' |
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27140 | 3' | -53.6 | NC_005832.1 | + | 27786 | 0.7 | 0.733144 |
Target: 5'- gAGACACCACAGUuauCACCcucaAgGGUAg -3' miRNA: 3'- gUCUGUGGUGUCGuuuGUGG----UgCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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