miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 90078 0.68 0.846864
Target:  5'- cCGGAUuuccucCCACAaaGAugGCCGCGGCGu -3'
miRNA:   3'- -GUCUGu-----GGUGUcgUUugUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 70728 0.69 0.753555
Target:  5'- gAGAgGCCGCcGCA---GCCGCGGCu -3'
miRNA:   3'- gUCUgUGGUGuCGUuugUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 47040 0.69 0.763589
Target:  5'- gGGGCACCACGuugucGUAGAUGCCG-GGCGa -3'
miRNA:   3'- gUCUGUGGUGU-----CGUUUGUGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 36211 0.69 0.773494
Target:  5'- gCGGACGCgGCGGCAGAgAaCGCGGgAg -3'
miRNA:   3'- -GUCUGUGgUGUCGUUUgUgGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 42609 0.68 0.811616
Target:  5'- gAGACGCUGCGGa--GCACCugGGg- -3'
miRNA:   3'- gUCUGUGGUGUCguuUGUGGugCCgu -5'
27140 3' -53.6 NC_005832.1 + 32795 0.68 0.820721
Target:  5'- cCAGGCACCACGaCu-GCACCACcGCc -3'
miRNA:   3'- -GUCUGUGGUGUcGuuUGUGGUGcCGu -5'
27140 3' -53.6 NC_005832.1 + 79635 0.68 0.820721
Target:  5'- -uGAgACCaaACAGCAAguggacggccuACACCACuGGCAa -3'
miRNA:   3'- guCUgUGG--UGUCGUU-----------UGUGGUG-CCGU- -5'
27140 3' -53.6 NC_005832.1 + 19662 0.68 0.82431
Target:  5'- gAGAC-CCGCAGCGGGuucgaaagccgcagcCGgCGCGGCGg -3'
miRNA:   3'- gUCUGuGGUGUCGUUU---------------GUgGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 25918 0.68 0.838354
Target:  5'- -uGACgaACCACAGCAGcucCGCCgugACGGCu -3'
miRNA:   3'- guCUG--UGGUGUCGUUu--GUGG---UGCCGu -5'
27140 3' -53.6 NC_005832.1 + 6942 0.69 0.753555
Target:  5'- -cGACGgCACAGUgagGGACGCCAUGGgGa -3'
miRNA:   3'- guCUGUgGUGUCG---UUUGUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 5097 0.69 0.753555
Target:  5'- gCAGAC-CCAacgccaGGCAGugGCCagACGGCGc -3'
miRNA:   3'- -GUCUGuGGUg-----UCGUUugUGG--UGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 32440 0.7 0.73726
Target:  5'- cCAGAgGCCGCgaggaGGCAGuACcuggccgcaaagucgGCCACGGCAg -3'
miRNA:   3'- -GUCUgUGGUG-----UCGUU-UG---------------UGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 56772 0.8 0.244507
Target:  5'- cCAGACACCGCGGCcuGCGCcugCugGGCGa -3'
miRNA:   3'- -GUCUGUGGUGUCGuuUGUG---GugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 2176 0.78 0.303455
Target:  5'- gGGACGCCACggacgucaugguccAGCAAAuUGCCACGGCGg -3'
miRNA:   3'- gUCUGUGGUG--------------UCGUUU-GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97138 0.77 0.336404
Target:  5'- aGGGCaaagGCUGCGGCAGACGCCGUGGCAa -3'
miRNA:   3'- gUCUG----UGGUGUCGUUUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97102 0.77 0.36933
Target:  5'- uCAGACGCCcuGgAGCAGGcCGCCGCGGUg -3'
miRNA:   3'- -GUCUGUGG--UgUCGUUU-GUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 46681 0.74 0.480439
Target:  5'- cCAGGCGCCu--GCAGGCGCaCACGGUc -3'
miRNA:   3'- -GUCUGUGGuguCGUUUGUG-GUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 105020 0.73 0.573406
Target:  5'- aAGACGCCAUgAGgAggUACCAgGGCAu -3'
miRNA:   3'- gUCUGUGGUG-UCgUuuGUGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 32138 0.72 0.605464
Target:  5'- ---uCACCACGGCAgacAACAUCAUGGCc -3'
miRNA:   3'- gucuGUGGUGUCGU---UUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 27786 0.7 0.733144
Target:  5'- gAGACACCACAGUuauCACCcucaAgGGUAg -3'
miRNA:   3'- gUCUGUGGUGUCGuuuGUGG----UgCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.