miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27140 3' -53.6 NC_005832.1 + 56772 0.8 0.244507
Target:  5'- cCAGACACCGCGGCcuGCGCcugCugGGCGa -3'
miRNA:   3'- -GUCUGUGGUGUCGuuUGUG---GugCCGU- -5'
27140 3' -53.6 NC_005832.1 + 2176 0.78 0.303455
Target:  5'- gGGACGCCACggacgucaugguccAGCAAAuUGCCACGGCGg -3'
miRNA:   3'- gUCUGUGGUG--------------UCGUUU-GUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97138 0.77 0.336404
Target:  5'- aGGGCaaagGCUGCGGCAGACGCCGUGGCAa -3'
miRNA:   3'- gUCUG----UGGUGUCGUUUGUGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 97102 0.77 0.36933
Target:  5'- uCAGACGCCcuGgAGCAGGcCGCCGCGGUg -3'
miRNA:   3'- -GUCUGUGG--UgUCGUUU-GUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 46681 0.74 0.480439
Target:  5'- cCAGGCGCCu--GCAGGCGCaCACGGUc -3'
miRNA:   3'- -GUCUGUGGuguCGUUUGUG-GUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 105020 0.73 0.573406
Target:  5'- aAGACGCCAUgAGgAggUACCAgGGCAu -3'
miRNA:   3'- gUCUGUGGUG-UCgUuuGUGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 32138 0.72 0.605464
Target:  5'- ---uCACCACGGCAgacAACAUCAUGGCc -3'
miRNA:   3'- gucuGUGGUGUCGU---UUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 27786 0.7 0.733144
Target:  5'- gAGACACCACAGUuauCACCcucaAgGGUAg -3'
miRNA:   3'- gUCUGUGGUGUCGuuuGUGG----UgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 42609 0.68 0.811616
Target:  5'- gAGACGCUGCGGa--GCACCugGGg- -3'
miRNA:   3'- gUCUGUGGUGUCguuUGUGGugCCgu -5'
27140 3' -53.6 NC_005832.1 + 36211 0.69 0.773494
Target:  5'- gCGGACGCgGCGGCAGAgAaCGCGGgAg -3'
miRNA:   3'- -GUCUGUGgUGUCGUUUgUgGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 47040 0.69 0.763589
Target:  5'- gGGGCACCACGuugucGUAGAUGCCG-GGCGa -3'
miRNA:   3'- gUCUGUGGUGU-----CGUUUGUGGUgCCGU- -5'
27140 3' -53.6 NC_005832.1 + 70728 0.69 0.753555
Target:  5'- gAGAgGCCGCcGCA---GCCGCGGCu -3'
miRNA:   3'- gUCUgUGGUGuCGUuugUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 6942 0.69 0.753555
Target:  5'- -cGACGgCACAGUgagGGACGCCAUGGgGa -3'
miRNA:   3'- guCUGUgGUGUCG---UUUGUGGUGCCgU- -5'
27140 3' -53.6 NC_005832.1 + 5097 0.69 0.753555
Target:  5'- gCAGAC-CCAacgccaGGCAGugGCCagACGGCGc -3'
miRNA:   3'- -GUCUGuGGUg-----UCGUUugUGG--UGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 32440 0.7 0.73726
Target:  5'- cCAGAgGCCGCgaggaGGCAGuACcuggccgcaaagucgGCCACGGCAg -3'
miRNA:   3'- -GUCUgUGGUG-----UCGUU-UG---------------UGGUGCCGU- -5'
27140 3' -53.6 NC_005832.1 + 30184 0.66 0.924866
Target:  5'- gCGGGCuCCGCAG-GAAUACCuguaACGGCu -3'
miRNA:   3'- -GUCUGuGGUGUCgUUUGUGG----UGCCGu -5'
27140 3' -53.6 NC_005832.1 + 9416 0.75 0.432036
Target:  5'- aCAGACAcCCGCAuaGGAUACUACGGCc -3'
miRNA:   3'- -GUCUGU-GGUGUcgUUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 1339 0.74 0.490438
Target:  5'- gCAGACugCACcGCGGAgguCGCCAUGGCc -3'
miRNA:   3'- -GUCUGugGUGuCGUUU---GUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 90243 0.73 0.562802
Target:  5'- aGGGCACCAggaGGUucuuucugagGAACGCCGCGGCc -3'
miRNA:   3'- gUCUGUGGUg--UCG----------UUUGUGGUGCCGu -5'
27140 3' -53.6 NC_005832.1 + 1016 0.72 0.602245
Target:  5'- cCGGGgGCUGCAGCGccuucacacccaggGGCACCuGCGGCAa -3'
miRNA:   3'- -GUCUgUGGUGUCGU--------------UUGUGG-UGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.