miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 26645 0.68 0.611241
Target:  5'- -aGGUCUUUuCCAUCaaGAGGGCCGCa -3'
miRNA:   3'- cgCCGGGAGcGGUGGaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 28066 0.73 0.382182
Target:  5'- gGCGGgacCCUUUGCCACCUUGAccaCCGCg -3'
miRNA:   3'- -CGCC---GGGAGCGGUGGAAUUuccGGCG- -5'
27162 3' -57.9 NC_005832.1 + 28087 0.67 0.713808
Target:  5'- -aGGCCCuUUGCCG---UGGAGGuuGCg -3'
miRNA:   3'- cgCCGGG-AGCGGUggaAUUUCCggCG- -5'
27162 3' -57.9 NC_005832.1 + 29780 0.66 0.753357
Target:  5'- cGCcGCCCcCGCCGCCccagaccAGGCCu- -3'
miRNA:   3'- -CGcCGGGaGCGGUGGaauu---UCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 31535 0.75 0.263285
Target:  5'- uGUGGCCCagugCGCCACCgcucaguguagAGAGGCgGUg -3'
miRNA:   3'- -CGCCGGGa---GCGGUGGaa---------UUUCCGgCG- -5'
27162 3' -57.9 NC_005832.1 + 32294 0.67 0.713808
Target:  5'- cGUGGacucCCCUCGCCGCUccuccGGCCa- -3'
miRNA:   3'- -CGCC----GGGAGCGGUGGaauuuCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 35990 0.72 0.416556
Target:  5'- aGCGGCCCggggCGUUguaguGCCUaGAGGGCCu- -3'
miRNA:   3'- -CGCCGGGa---GCGG-----UGGAaUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 36129 0.68 0.651508
Target:  5'- -aGGCCCUcuaggcacuacaaCGCC-CC----GGGCCGCu -3'
miRNA:   3'- cgCCGGGA-------------GCGGuGGaauuUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 36279 0.66 0.772517
Target:  5'- gGCGGCCuCUgcgacuauggaCGCCAgcucucCCUcgGAAGGCCu- -3'
miRNA:   3'- -CGCCGG-GA-----------GCGGU------GGAa-UUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 36647 0.8 0.127247
Target:  5'- cCGGCCCUggcguaCGCCGCCUccguGGCCGCc -3'
miRNA:   3'- cGCCGGGA------GCGGUGGAauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 36808 0.69 0.580404
Target:  5'- cGCGGCuCCUacCGCCGCCUccuucAAGGUCc- -3'
miRNA:   3'- -CGCCG-GGA--GCGGUGGAau---UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 38070 0.68 0.621561
Target:  5'- aCGGCCCUgGCaCGCCUgggauguAAGGCaucacaGUg -3'
miRNA:   3'- cGCCGGGAgCG-GUGGAau-----UUCCGg-----CG- -5'
27162 3' -57.9 NC_005832.1 + 40896 0.68 0.646349
Target:  5'- -gGGCCCU-GCCaaaggaggggacccgACCgggUAAGcGGCCGCu -3'
miRNA:   3'- cgCCGGGAgCGG---------------UGGa--AUUU-CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 40950 0.69 0.570191
Target:  5'- cGCGGCUCcagCGCUGCCccugauAAGGCCa- -3'
miRNA:   3'- -CGCCGGGa--GCGGUGGaau---UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 42285 0.69 0.549906
Target:  5'- -aGGCCCUUGgaaaaaCugCgagGGAGGCCGUg -3'
miRNA:   3'- cgCCGGGAGCg-----GugGaa-UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 42536 0.66 0.760116
Target:  5'- cGgGGUCCUCgggggcggacgcguGCUGCUccaugagGAGGGCCGCc -3'
miRNA:   3'- -CgCCGGGAG--------------CGGUGGaa-----UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 42647 0.66 0.74361
Target:  5'- uGCGGUCCUCuuCCACa---GAGGCC-Cg -3'
miRNA:   3'- -CGCCGGGAGc-GGUGgaauUUCCGGcG- -5'
27162 3' -57.9 NC_005832.1 + 50545 0.67 0.713808
Target:  5'- -aGGaucCUCUCGcCCGCCUUGAc-GCCGCu -3'
miRNA:   3'- cgCC---GGGAGC-GGUGGAAUUucCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 52839 0.67 0.70372
Target:  5'- gGCGGCCgC-CGCCGCUcacucugUGGGGGUgGUc -3'
miRNA:   3'- -CGCCGG-GaGCGGUGGa------AUUUCCGgCG- -5'
27162 3' -57.9 NC_005832.1 + 52911 0.71 0.468649
Target:  5'- cUGGCCCUcaggauccugccggCGaCCAUCUcu-AGGCCGCa -3'
miRNA:   3'- cGCCGGGA--------------GC-GGUGGAauuUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.