miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 1031 0.71 0.480995
Target:  5'- cCGGCCCcUGCUacGCCg--GGGGCUGCa -3'
miRNA:   3'- cGCCGGGaGCGG--UGGaauUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 2267 0.69 0.580404
Target:  5'- -aGGgCCUCGCCGaauaUGGGGGCCaGCa -3'
miRNA:   3'- cgCCgGGAGCGGUgga-AUUUCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 2796 0.67 0.70372
Target:  5'- -gGGUCCUCGCCAUaguccacAGGCCc- -3'
miRNA:   3'- cgCCGGGAGCGGUGgaauu--UCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 4261 0.73 0.373888
Target:  5'- uUGGCCCUCGCguCCUcgcGGGCCu- -3'
miRNA:   3'- cGCCGGGAGCGguGGAauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 4759 0.68 0.620528
Target:  5'- uCGGCCCcCGCCGaucccauCCU--GGGGUCGUa -3'
miRNA:   3'- cGCCGGGaGCGGU-------GGAauUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 6108 0.66 0.752387
Target:  5'- cGCGGCCUgccucauggagguUCGCgGCUgcGAGGGuuGg -3'
miRNA:   3'- -CGCCGGG-------------AGCGgUGGaaUUUCCggCg -5'
27162 3' -57.9 NC_005832.1 + 7295 0.69 0.590655
Target:  5'- gGCGGUCCU-GUguCCgggAGAGGCUGUg -3'
miRNA:   3'- -CGCCGGGAgCGguGGaa-UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 8275 0.7 0.523883
Target:  5'- cCGGCUCcCGUCAggauaucuagggacuCCUcGAAGGCCGCc -3'
miRNA:   3'- cGCCGGGaGCGGU---------------GGAaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 11641 0.66 0.753357
Target:  5'- aGgGuGCCCUCGUCgACCUccccccGGCCGa -3'
miRNA:   3'- -CgC-CGGGAGCGG-UGGAauuu--CCGGCg -5'
27162 3' -57.9 NC_005832.1 + 11702 0.67 0.70372
Target:  5'- uCGGaCgUCGCCAUgagGAGGGCCGUc -3'
miRNA:   3'- cGCCgGgAGCGGUGgaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 11817 0.69 0.560023
Target:  5'- cUGGCUCUgGCCGggcuCCUcgUGAuGGCCGCc -3'
miRNA:   3'- cGCCGGGAgCGGU----GGA--AUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 11935 0.68 0.642219
Target:  5'- cCGGCCagaGCCAgggcaccuucacCCUUGAAGGCgaGCa -3'
miRNA:   3'- cGCCGGgagCGGU------------GGAAUUUCCGg-CG- -5'
27162 3' -57.9 NC_005832.1 + 12580 0.66 0.762996
Target:  5'- aUGGgCCUUGaUgAgCUUGAGGGCCGUc -3'
miRNA:   3'- cGCCgGGAGC-GgUgGAAUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 13771 0.75 0.276833
Target:  5'- gGCGGCCUcccugcaCGCCGCCUcucccuugcucucUGAGGGuuGCu -3'
miRNA:   3'- -CGCCGGGa------GCGGUGGA-------------AUUUCCggCG- -5'
27162 3' -57.9 NC_005832.1 + 14161 0.68 0.65254
Target:  5'- uCGGUCUUgGCCGgUUUGAcGGCUGCc -3'
miRNA:   3'- cGCCGGGAgCGGUgGAAUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 20027 0.67 0.683368
Target:  5'- gGCGGCggacgcgaugCUgugCGCCACCaucaUGAGGGCCa- -3'
miRNA:   3'- -CGCCG----------GGa--GCGGUGGa---AUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 20683 0.67 0.697637
Target:  5'- -gGGCCCU-GCCuuCCggAucgggagcagaguacGAGGCCGCc -3'
miRNA:   3'- cgCCGGGAgCGGu-GGaaU---------------UUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 20854 0.7 0.490599
Target:  5'- aCGGCUCUaGCCACCgugUAcgccAGGGCgGCc -3'
miRNA:   3'- cGCCGGGAgCGGUGGa--AU----UUCCGgCG- -5'
27162 3' -57.9 NC_005832.1 + 26479 1.13 0.00062
Target:  5'- gGCGGCCCUCGCCACCUUAAAGGCCGCg -3'
miRNA:   3'- -CGCCGGGAGCGGUGGAAUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 26611 0.73 0.373888
Target:  5'- cGCGGCCUUUaagguggcgaggGCCGCCgggu-GGCUGCc -3'
miRNA:   3'- -CGCCGGGAG------------CGGUGGaauuuCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.