miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 97088 0.67 0.683368
Target:  5'- -aGGCCCUgucgaccucagaCGCC-CUggAGcAGGCCGCc -3'
miRNA:   3'- cgCCGGGA------------GCGGuGGaaUU-UCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 102077 0.69 0.570191
Target:  5'- aCGGUaacaC-CGuCCGCCaUGGAGGCCGCc -3'
miRNA:   3'- cGCCGg---GaGC-GGUGGaAUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 40950 0.69 0.570191
Target:  5'- cGCGGCUCcagCGCUGCCccugauAAGGCCa- -3'
miRNA:   3'- -CGCCGGGa--GCGGUGGaau---UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 36808 0.69 0.580404
Target:  5'- cGCGGCuCCUacCGCCGCCUccuucAAGGUCc- -3'
miRNA:   3'- -CGCCG-GGA--GCGGUGGAau---UUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 7295 0.69 0.590655
Target:  5'- gGCGGUCCU-GUguCCgggAGAGGCUGUg -3'
miRNA:   3'- -CGCCGGGAgCGguGGaa-UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 56780 0.68 0.621561
Target:  5'- cGCGGCCUgCGCCugCU---GGGCg-- -3'
miRNA:   3'- -CGCCGGGaGCGGugGAauuUCCGgcg -5'
27162 3' -57.9 NC_005832.1 + 40896 0.68 0.646349
Target:  5'- -gGGCCCU-GCCaaaggaggggacccgACCgggUAAGcGGCCGCu -3'
miRNA:   3'- cgCCGGGAgCGG---------------UGGa--AUUU-CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 14161 0.68 0.65254
Target:  5'- uCGGUCUUgGCCGgUUUGAcGGCUGCc -3'
miRNA:   3'- cGCCGGGAgCGGUgGAAUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 87304 0.67 0.673123
Target:  5'- aGCcGCCgUCGCCAUCcccGAGGCCcCa -3'
miRNA:   3'- -CGcCGGgAGCGGUGGaauUUCCGGcG- -5'
27162 3' -57.9 NC_005832.1 + 11817 0.69 0.560023
Target:  5'- cUGGCUCUgGCCGggcuCCUcgUGAuGGCCGCc -3'
miRNA:   3'- cGCCGGGAgCGGU----GGA--AUUuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 102370 0.69 0.549906
Target:  5'- gGCGGUCgUaGCCAU---GGAGGCCGCc -3'
miRNA:   3'- -CGCCGGgAgCGGUGgaaUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 42285 0.69 0.549906
Target:  5'- -aGGCCCUUGgaaaaaCugCgagGGAGGCCGUg -3'
miRNA:   3'- cgCCGGGAGCg-----GugGaa-UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 95797 0.75 0.290931
Target:  5'- gGCuGCCCUCgGCUugCUgcccuGGCCGCg -3'
miRNA:   3'- -CGcCGGGAG-CGGugGAauuu-CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 67026 0.73 0.34975
Target:  5'- -gGGCCCUggcgGCgGCCguggcGAGGGCCGCg -3'
miRNA:   3'- cgCCGGGAg---CGgUGGaa---UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 56015 0.73 0.355282
Target:  5'- cGCGGCCCUgggucuUGCCcccggaucucccuuGCCcuggUAGAGGCCGg -3'
miRNA:   3'- -CGCCGGGA------GCGG--------------UGGa---AUUUCCGGCg -5'
27162 3' -57.9 NC_005832.1 + 4261 0.73 0.373888
Target:  5'- uUGGCCCUCGCguCCUcgcGGGCCu- -3'
miRNA:   3'- cGCCGGGAGCGguGGAauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 35990 0.72 0.416556
Target:  5'- aGCGGCCCggggCGUUguaguGCCUaGAGGGCCu- -3'
miRNA:   3'- -CGCCGGGa---GCGG-----UGGAaUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 103974 0.72 0.416556
Target:  5'- gGUGGCCCUgaggGCCGCCgcGGAcGCCGUg -3'
miRNA:   3'- -CGCCGGGAg---CGGUGGaaUUUcCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 52911 0.71 0.468649
Target:  5'- cUGGCCCUcaggauccugccggCGaCCAUCUcu-AGGCCGCa -3'
miRNA:   3'- cGCCGGGA--------------GC-GGUGGAauuUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 96153 0.7 0.539846
Target:  5'- gGUGGCacaUUGCCACCagGGuGGCCGUc -3'
miRNA:   3'- -CGCCGgg-AGCGGUGGaaUUuCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.