miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 3' -57.9 NC_005832.1 + 26479 1.13 0.00062
Target:  5'- gGCGGCCCUCGCCACCUUAAAGGCCGCg -3'
miRNA:   3'- -CGCCGGGAGCGGUGGAAUUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 67163 0.85 0.061776
Target:  5'- cGCGGCCCUCGCCAC------GGCCGCc -3'
miRNA:   3'- -CGCCGGGAGCGGUGgaauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 36647 0.8 0.127247
Target:  5'- cCGGCCCUggcguaCGCCGCCUccguGGCCGCc -3'
miRNA:   3'- cGCCGGGA------GCGGUGGAauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 87570 0.75 0.257026
Target:  5'- uCGGCCUUUGCCGCCggguccauGGCCaGCa -3'
miRNA:   3'- cGCCGGGAGCGGUGGaauuu---CCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 31535 0.75 0.263285
Target:  5'- uGUGGCCCagugCGCCACCgcucaguguagAGAGGCgGUg -3'
miRNA:   3'- -CGCCGGGa---GCGGUGGaa---------UUUCCGgCG- -5'
27162 3' -57.9 NC_005832.1 + 13771 0.75 0.276833
Target:  5'- gGCGGCCUcccugcaCGCCGCCUcucccuugcucucUGAGGGuuGCu -3'
miRNA:   3'- -CGCCGGGa------GCGGUGGA-------------AUUUCCggCG- -5'
27162 3' -57.9 NC_005832.1 + 95797 0.75 0.290931
Target:  5'- gGCuGCCCUCgGCUugCUgcccuGGCCGCg -3'
miRNA:   3'- -CGcCGGGAG-CGGugGAauuu-CCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 94897 0.74 0.297839
Target:  5'- uCGGCCCUCGCgCAgauCCUccuGGGCCuGCa -3'
miRNA:   3'- cGCCGGGAGCG-GU---GGAauuUCCGG-CG- -5'
27162 3' -57.9 NC_005832.1 + 67026 0.73 0.34975
Target:  5'- -gGGCCCUggcgGCgGCCguggcGAGGGCCGCg -3'
miRNA:   3'- cgCCGGGAg---CGgUGGaa---UUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 56015 0.73 0.355282
Target:  5'- cGCGGCCCUgggucuUGCCcccggaucucccuuGCCcuggUAGAGGCCGg -3'
miRNA:   3'- -CGCCGGGA------GCGG--------------UGGa---AUUUCCGGCg -5'
27162 3' -57.9 NC_005832.1 + 83393 0.73 0.365718
Target:  5'- uUGGCCC-CGCCACCUcAAGGGUa-- -3'
miRNA:   3'- cGCCGGGaGCGGUGGAaUUUCCGgcg -5'
27162 3' -57.9 NC_005832.1 + 4261 0.73 0.373888
Target:  5'- uUGGCCCUCGCguCCUcgcGGGCCu- -3'
miRNA:   3'- cGCCGGGAGCGguGGAauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 26611 0.73 0.373888
Target:  5'- cGCGGCCUUUaagguggcgaggGCCGCCgggu-GGCUGCc -3'
miRNA:   3'- -CGCCGGGAG------------CGGUGGaauuuCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 28066 0.73 0.382182
Target:  5'- gGCGGgacCCUUUGCCACCUUGAccaCCGCg -3'
miRNA:   3'- -CGCC---GGGAGCGGUGGAAUUuccGGCG- -5'
27162 3' -57.9 NC_005832.1 + 72423 0.72 0.416556
Target:  5'- uGCGGCCCcuggUCGCC-CCU---GGGCCc- -3'
miRNA:   3'- -CGCCGGG----AGCGGuGGAauuUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 103974 0.72 0.416556
Target:  5'- gGUGGCCCUgaggGCCGCCgcGGAcGCCGUg -3'
miRNA:   3'- -CGCCGGGAg---CGGUGGaaUUUcCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 35990 0.72 0.416556
Target:  5'- aGCGGCCCggggCGUUguaguGCCUaGAGGGCCu- -3'
miRNA:   3'- -CGCCGGGa---GCGG-----UGGAaUUUCCGGcg -5'
27162 3' -57.9 NC_005832.1 + 52911 0.71 0.468649
Target:  5'- cUGGCCCUcaggauccugccggCGaCCAUCUcu-AGGCCGCa -3'
miRNA:   3'- cGCCGGGA--------------GC-GGUGGAauuUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 1031 0.71 0.480995
Target:  5'- cCGGCCCcUGCUacGCCg--GGGGCUGCa -3'
miRNA:   3'- cGCCGGGaGCGG--UGGaauUUCCGGCG- -5'
27162 3' -57.9 NC_005832.1 + 78577 0.71 0.480995
Target:  5'- uCGGUCgC-CGCCGCCUUuGAGGCaUGCu -3'
miRNA:   3'- cGCCGG-GaGCGGUGGAAuUUCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.