Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27176 | 5' | -58.6 | NC_005832.1 | + | 29511 | 0.67 | 0.650704 |
Target: 5'- cCCCUGGauauaGcCUCCCugaGCGGAGGCCa -3' miRNA: 3'- -GGGACUccga-CaGAGGG---UGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 29941 | 0.68 | 0.609692 |
Target: 5'- gCCgccaaGCUGUCUUCugaagaCACAGAGGCCu -3' miRNA: 3'- gGGacuc-CGACAGAGG------GUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 30482 | 0.66 | 0.72057 |
Target: 5'- cCUCUGAaagGGUUGUCUCUCACAagacucuuuacgaGAGGg- -3' miRNA: 3'- -GGGACU---CCGACAGAGGGUGU-------------CUCCgg -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 35044 | 1.14 | 0.000505 |
Target: 5'- aCCCUGAGGCUGUCUCCCACAGAGGCCa -3' miRNA: 3'- -GGGACUCCGACAGAGGGUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 36247 | 0.66 | 0.701567 |
Target: 5'- aCCUUGAGGCcGUaCUuggagaggaccCUCGCGGcGGCCu -3' miRNA: 3'- -GGGACUCCGaCA-GA-----------GGGUGUCuCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 36424 | 0.68 | 0.579081 |
Target: 5'- uUCCgaggGAGaGCUGgcgUCCauaguCGCAGAGGCCg -3' miRNA: 3'- -GGGa---CUC-CGACag-AGG-----GUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 39575 | 0.75 | 0.252362 |
Target: 5'- cCCCUGAGGCccagccgCUCCCACGGAcccgaccGGaCCg -3' miRNA: 3'- -GGGACUCCGaca----GAGGGUGUCU-------CC-GG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 39700 | 0.69 | 0.567933 |
Target: 5'- cCCCUG-GGUccugccgguuccaUGUCUCCCACu--GGUCc -3' miRNA: 3'- -GGGACuCCG-------------ACAGAGGGUGucuCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 42658 | 0.75 | 0.27174 |
Target: 5'- gCCCUuGGaGUUGcgguccUCUUCCACAGAGGCCc -3' miRNA: 3'- -GGGAcUC-CGAC------AGAGGGUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 43108 | 0.67 | 0.671154 |
Target: 5'- gCCgagGGGGUgggGuUCUCCCugGagacacccaggGAGGCCg -3' miRNA: 3'- gGGa--CUCCGa--C-AGAGGGugU-----------CUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 43782 | 0.66 | 0.750956 |
Target: 5'- gUCCguaaaGAGGCUGgguuUCgacgagauggCCCACGG-GGCCc -3' miRNA: 3'- -GGGa----CUCCGAC----AGa---------GGGUGUCuCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 47918 | 0.68 | 0.579081 |
Target: 5'- aCCCcGAGGCggagGUCcuggCCgAgAGGGGCUa -3' miRNA: 3'- -GGGaCUCCGa---CAGa---GGgUgUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 56019 | 0.66 | 0.741251 |
Target: 5'- gCCCUG-GGUcuUGcccccggaUCUCCCuugcccuggUAGAGGCCg -3' miRNA: 3'- -GGGACuCCG--AC--------AGAGGGu--------GUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 56329 | 0.68 | 0.628143 |
Target: 5'- gCCUGGGGaCguagcccagggccacUG-CUccuccuccuauaagaCCCACAGAGGCCa -3' miRNA: 3'- gGGACUCC-G---------------ACaGA---------------GGGUGUCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 58533 | 0.72 | 0.38149 |
Target: 5'- aCCCUuGGGCcacaguuUGUCUCCUagccuccuagugACAGAGGCg -3' miRNA: 3'- -GGGAcUCCG-------ACAGAGGG------------UGUCUCCGg -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 66310 | 0.67 | 0.671154 |
Target: 5'- aCCUGucuaGCUGUCccUCCCACcccaAGAGGUUc -3' miRNA: 3'- gGGACuc--CGACAG--AGGGUG----UCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 67088 | 0.68 | 0.579081 |
Target: 5'- gCCCUgGAGGCca-CUCCgUAC-GAGGCCa -3' miRNA: 3'- -GGGA-CUCCGacaGAGG-GUGuCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 67240 | 0.73 | 0.341581 |
Target: 5'- gCCCUGggagaggGGGCUGccucUCUaCCCGguGAGGCUg -3' miRNA: 3'- -GGGAC-------UCCGAC----AGA-GGGUguCUCCGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 72693 | 0.68 | 0.589256 |
Target: 5'- gCCCaGGGGCcccacGUC-CCCACGGGGaCCg -3' miRNA: 3'- -GGGaCUCCGa----CAGaGGGUGUCUCcGG- -5' |
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27176 | 5' | -58.6 | NC_005832.1 | + | 73085 | 0.66 | 0.710598 |
Target: 5'- aCCCUGGGGUccGUCgggaCCUACGGgacccuguauaccGGGCUc -3' miRNA: 3'- -GGGACUCCGa-CAGa---GGGUGUC-------------UCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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