miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27176 5' -58.6 NC_005832.1 + 652 0.75 0.24755
Target:  5'- cCCCgccgGGGGCUGgugcagaaagugguaCUcggCCCACAGGGGCCc -3'
miRNA:   3'- -GGGa---CUCCGACa--------------GA---GGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 881 0.69 0.568944
Target:  5'- cCCCUGGGugugaaggcGCUGcagCCCccggcguaGCAGGGGCCg -3'
miRNA:   3'- -GGGACUC---------CGACagaGGG--------UGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 4711 0.66 0.721563
Target:  5'- gCCUUGAGGCaggacuuggUGaCUUCCACgaccgaGGuGGCCa -3'
miRNA:   3'- -GGGACUCCG---------ACaGAGGGUG------UCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 5260 0.72 0.390677
Target:  5'- aCgCUGAGGUUGUCgUCCUGCAuGGcGCCg -3'
miRNA:   3'- -GgGACUCCGACAG-AGGGUGUcUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 7722 0.66 0.701567
Target:  5'- gCUcGAGGCUcgcaGUCuuUCCCACcGuGGCCg -3'
miRNA:   3'- gGGaCUCCGA----CAG--AGGGUGuCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 7942 0.66 0.741251
Target:  5'- cCCCUGAGGagcCUGUaggaCUCUaCACcgGGAGuGCCg -3'
miRNA:   3'- -GGGACUCC---GACA----GAGG-GUG--UCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 7953 0.76 0.229616
Target:  5'- aCCCUGGGGCUGgcggCggCCAaaaAGAGGCUu -3'
miRNA:   3'- -GGGACUCCGACa---GagGGUg--UCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 9712 0.68 0.579081
Target:  5'- cUCCUGAcGG-UGUCUCCCGUGGAGaCCa -3'
miRNA:   3'- -GGGACU-CCgACAGAGGGUGUCUCcGG- -5'
27176 5' -58.6 NC_005832.1 + 9996 0.67 0.640453
Target:  5'- aCgUGAGGCUGga--CgGCGGAGGCg -3'
miRNA:   3'- gGgACUCCGACagagGgUGUCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 10042 0.76 0.22407
Target:  5'- cCCCUGcccgcuucgucGGGCgcGUCggCCGCGGAGGCCg -3'
miRNA:   3'- -GGGAC-----------UCCGa-CAGagGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 10137 0.68 0.589255
Target:  5'- aCCUGGGGgUGUCccugcCCCugGGAacaGCCa -3'
miRNA:   3'- gGGACUCCgACAGa----GGGugUCUc--CGG- -5'
27176 5' -58.6 NC_005832.1 + 11892 0.74 0.298486
Target:  5'- --gUGAgGGCUccGUCUCCCAUAGcGGGCCg -3'
miRNA:   3'- gggACU-CCGA--CAGAGGGUGUC-UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 15816 0.66 0.750956
Target:  5'- gCCgggaGAGGCg--CUCCa--AGAGGCCc -3'
miRNA:   3'- gGGa---CUCCGacaGAGGgugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 16729 0.66 0.711599
Target:  5'- gCCCUGGcGGUgga-UCCCAUcaAGAGcGCCa -3'
miRNA:   3'- -GGGACU-CCGacagAGGGUG--UCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 17034 0.71 0.452391
Target:  5'- aCCUcGAGGgagGUCUCCCcgACAcugucGAGGCCa -3'
miRNA:   3'- gGGA-CUCCga-CAGAGGG--UGU-----CUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 19729 0.66 0.721563
Target:  5'- cUCCUGcGGCggGUUUCCCucuuACGGcGGGUCg -3'
miRNA:   3'- -GGGACuCCGa-CAGAGGG----UGUC-UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 19771 0.66 0.741251
Target:  5'- cCCCcGAGGCgcUUUCCCcCGgcgcccguggacGAGGCCg -3'
miRNA:   3'- -GGGaCUCCGacAGAGGGuGU------------CUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 19856 0.66 0.741251
Target:  5'- cCCCUG-GGCcugacgGUCcCCCugACGGucuuGGCCg -3'
miRNA:   3'- -GGGACuCCGa-----CAGaGGG--UGUCu---CCGG- -5'
27176 5' -58.6 NC_005832.1 + 20486 0.66 0.750956
Target:  5'- cCCUUGAuGCUGUaaCCCGCcacccaAGGGGCg -3'
miRNA:   3'- -GGGACUcCGACAgaGGGUG------UCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 27184 0.66 0.711599
Target:  5'- ---gGGGGCUccggguUCUCCCACGGAcguuucgcgGGCCu -3'
miRNA:   3'- gggaCUCCGAc-----AGAGGGUGUCU---------CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.