miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27176 5' -58.6 NC_005832.1 + 35044 1.14 0.000505
Target:  5'- aCCCUGAGGCUGUCUCCCACAGAGGCCa -3'
miRNA:   3'- -GGGACUCCGACAGAGGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 10042 0.76 0.22407
Target:  5'- cCCCUGcccgcuucgucGGGCgcGUCggCCGCGGAGGCCg -3'
miRNA:   3'- -GGGAC-----------UCCGa-CAGagGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 7953 0.76 0.229616
Target:  5'- aCCCUGGGGCUGgcggCggCCAaaaAGAGGCUu -3'
miRNA:   3'- -GGGACUCCGACa---GagGGUg--UCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 652 0.75 0.24755
Target:  5'- cCCCgccgGGGGCUGgugcagaaagugguaCUcggCCCACAGGGGCCc -3'
miRNA:   3'- -GGGa---CUCCGACa--------------GA---GGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 39575 0.75 0.252362
Target:  5'- cCCCUGAGGCccagccgCUCCCACGGAcccgaccGGaCCg -3'
miRNA:   3'- -GGGACUCCGaca----GAGGGUGUCU-------CC-GG- -5'
27176 5' -58.6 NC_005832.1 + 42658 0.75 0.27174
Target:  5'- gCCCUuGGaGUUGcgguccUCUUCCACAGAGGCCc -3'
miRNA:   3'- -GGGAcUC-CGAC------AGAGGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 11892 0.74 0.298486
Target:  5'- --gUGAgGGCUccGUCUCCCAUAGcGGGCCg -3'
miRNA:   3'- gggACU-CCGA--CAGAGGGUGUC-UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 95568 0.74 0.298487
Target:  5'- gCCgacuacggGAGGCUGUCUCCgaUACGGucGCCg -3'
miRNA:   3'- gGGa-------CUCCGACAGAGG--GUGUCucCGG- -5'
27176 5' -58.6 NC_005832.1 + 67240 0.73 0.341581
Target:  5'- gCCCUGggagaggGGGCUGccucUCUaCCCGguGAGGCUg -3'
miRNA:   3'- -GGGAC-------UCCGAC----AGA-GGGUguCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 103783 0.73 0.350097
Target:  5'- uCUCUGuGGUUGacggCUCCCGacuguauguCGGAGGCCa -3'
miRNA:   3'- -GGGACuCCGACa---GAGGGU---------GUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 102365 0.72 0.37408
Target:  5'- gCC-GAGGCgGUCguagCCAUGGAGGCCg -3'
miRNA:   3'- gGGaCUCCGaCAGag--GGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 58533 0.72 0.38149
Target:  5'- aCCCUuGGGCcacaguuUGUCUCCUagccuccuagugACAGAGGCg -3'
miRNA:   3'- -GGGAcUCCG-------ACAGAGGG------------UGUCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 100394 0.72 0.382319
Target:  5'- aCCCauaaaggaaaUGAGGCUGUCUgaCCu--GAGGCCc -3'
miRNA:   3'- -GGG----------ACUCCGACAGAg-GGuguCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 5260 0.72 0.390677
Target:  5'- aCgCUGAGGUUGUCgUCCUGCAuGGcGCCg -3'
miRNA:   3'- -GgGACUCCGACAG-AGGGUGUcUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 79143 0.72 0.399153
Target:  5'- --gUGAGGCcuacGUCUCCCugAGggugaGGGCCa -3'
miRNA:   3'- gggACUCCGa---CAGAGGGugUC-----UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 92532 0.71 0.416455
Target:  5'- gCUCUG-GGCUGcCUCCUccucGCGGGGuGCCu -3'
miRNA:   3'- -GGGACuCCGACaGAGGG----UGUCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 91778 0.71 0.425276
Target:  5'- gCCUGAcgGGCUuaGUCaagaccacCCCGCAGAGGUCc -3'
miRNA:   3'- gGGACU--CCGA--CAGa-------GGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 17034 0.71 0.452391
Target:  5'- aCCUcGAGGgagGUCUCCCcgACAcugucGAGGCCa -3'
miRNA:   3'- gGGA-CUCCga-CAGAGGG--UGU-----CUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 78956 0.69 0.538828
Target:  5'- aCCCUGAGGCacGUCgaagguaaUCaCCGCGGgguAGGUCa -3'
miRNA:   3'- -GGGACUCCGa-CAG--------AG-GGUGUC---UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 81310 0.69 0.548812
Target:  5'- aUCC-GA-GCUcgGUCUCUgGCAGGGGCCa -3'
miRNA:   3'- -GGGaCUcCGA--CAGAGGgUGUCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.