miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27176 5' -58.6 NC_005832.1 + 43782 0.66 0.750956
Target:  5'- gUCCguaaaGAGGCUGgguuUCgacgagauggCCCACGG-GGCCc -3'
miRNA:   3'- -GGGa----CUCCGAC----AGa---------GGGUGUCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 29511 0.67 0.650704
Target:  5'- cCCCUGGauauaGcCUCCCugaGCGGAGGCCa -3'
miRNA:   3'- -GGGACUccga-CaGAGGG---UGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 43108 0.67 0.671154
Target:  5'- gCCgagGGGGUgggGuUCUCCCugGagacacccaggGAGGCCg -3'
miRNA:   3'- gGGa--CUCCGa--C-AGAGGGugU-----------CUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 36247 0.66 0.701567
Target:  5'- aCCUUGAGGCcGUaCUuggagaggaccCUCGCGGcGGCCu -3'
miRNA:   3'- -GGGACUCCGaCA-GA-----------GGGUGUCuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 30482 0.66 0.72057
Target:  5'- cCUCUGAaagGGUUGUCUCUCACAagacucuuuacgaGAGGg- -3'
miRNA:   3'- -GGGACU---CCGACAGAGGGUGU-------------CUCCgg -5'
27176 5' -58.6 NC_005832.1 + 80467 0.66 0.73145
Target:  5'- aUCCUGAgaacGGacacugGUUUCCC-CAGGGGCa -3'
miRNA:   3'- -GGGACU----CCga----CAGAGGGuGUCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 19771 0.66 0.741251
Target:  5'- cCCCcGAGGCgcUUUCCCcCGgcgcccguggacGAGGCCg -3'
miRNA:   3'- -GGGaCUCCGacAGAGGGuGU------------CUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 56019 0.66 0.741251
Target:  5'- gCCCUG-GGUcuUGcccccggaUCUCCCuugcccuggUAGAGGCCg -3'
miRNA:   3'- -GGGACuCCG--AC--------AGAGGGu--------GUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 15816 0.66 0.750956
Target:  5'- gCCgggaGAGGCg--CUCCa--AGAGGCCc -3'
miRNA:   3'- gGGa---CUCCGacaGAGGgugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 56329 0.68 0.628143
Target:  5'- gCCUGGGGaCguagcccagggccacUG-CUccuccuccuauaagaCCCACAGAGGCCa -3'
miRNA:   3'- gGGACUCC-G---------------ACaGA---------------GGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 98069 0.68 0.609692
Target:  5'- aCCgaaggUGAGGaggGUCUCCa--AGAGGCCc -3'
miRNA:   3'- gGG-----ACUCCga-CAGAGGgugUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 10137 0.68 0.589255
Target:  5'- aCCUGGGGgUGUCccugcCCCugGGAacaGCCa -3'
miRNA:   3'- gGGACUCCgACAGa----GGGugUCUc--CGG- -5'
27176 5' -58.6 NC_005832.1 + 7953 0.76 0.229616
Target:  5'- aCCCUGGGGCUGgcggCggCCAaaaAGAGGCUu -3'
miRNA:   3'- -GGGACUCCGACa---GagGGUg--UCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 11892 0.74 0.298486
Target:  5'- --gUGAgGGCUccGUCUCCCAUAGcGGGCCg -3'
miRNA:   3'- gggACU-CCGA--CAGAGGGUGUC-UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 67240 0.73 0.341581
Target:  5'- gCCCUGggagaggGGGCUGccucUCUaCCCGguGAGGCUg -3'
miRNA:   3'- -GGGAC-------UCCGAC----AGA-GGGUguCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 102365 0.72 0.37408
Target:  5'- gCC-GAGGCgGUCguagCCAUGGAGGCCg -3'
miRNA:   3'- gGGaCUCCGaCAGag--GGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 79143 0.72 0.399153
Target:  5'- --gUGAGGCcuacGUCUCCCugAGggugaGGGCCa -3'
miRNA:   3'- gggACUCCGa---CAGAGGGugUC-----UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 91778 0.71 0.425276
Target:  5'- gCCUGAcgGGCUuaGUCaagaccacCCCGCAGAGGUCc -3'
miRNA:   3'- gGGACU--CCGA--CAGa-------GGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 881 0.69 0.568944
Target:  5'- cCCCUGGGugugaaggcGCUGcagCCCccggcguaGCAGGGGCCg -3'
miRNA:   3'- -GGGACUC---------CGACagaGGG--------UGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 67088 0.68 0.579081
Target:  5'- gCCCUgGAGGCca-CUCCgUAC-GAGGCCa -3'
miRNA:   3'- -GGGA-CUCCGacaGAGG-GUGuCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.