miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27176 5' -58.6 NC_005832.1 + 67088 0.68 0.579081
Target:  5'- gCCCUgGAGGCca-CUCCgUAC-GAGGCCa -3'
miRNA:   3'- -GGGA-CUCCGacaGAGG-GUGuCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 78956 0.69 0.538828
Target:  5'- aCCCUGAGGCacGUCgaagguaaUCaCCGCGGgguAGGUCa -3'
miRNA:   3'- -GGGACUCCGa-CAG--------AG-GGUGUC---UCCGG- -5'
27176 5' -58.6 NC_005832.1 + 81310 0.69 0.548812
Target:  5'- aUCC-GA-GCUcgGUCUCUgGCAGGGGCCa -3'
miRNA:   3'- -GGGaCUcCGA--CAGAGGgUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 39700 0.69 0.567933
Target:  5'- cCCCUG-GGUccugccgguuccaUGUCUCCCACu--GGUCc -3'
miRNA:   3'- -GGGACuCCG-------------ACAGAGGGUGucuCCGG- -5'
27176 5' -58.6 NC_005832.1 + 79866 0.69 0.568944
Target:  5'- uUCCUGAGGaagaUGagggCUCCCucugGCAGGGGUUc -3'
miRNA:   3'- -GGGACUCCg---ACa---GAGGG----UGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 73129 0.69 0.568944
Target:  5'- cCUUUGGGGCcucUGUCuccccuuuUCCCAUuGGGGCCc -3'
miRNA:   3'- -GGGACUCCG---ACAG--------AGGGUGuCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 85778 0.68 0.579081
Target:  5'- aCUCUGAGGCUGaagCcCCCGCAccuGCCa -3'
miRNA:   3'- -GGGACUCCGACa--GaGGGUGUcucCGG- -5'
27176 5' -58.6 NC_005832.1 + 47918 0.68 0.579081
Target:  5'- aCCCcGAGGCggagGUCcuggCCgAgAGGGGCUa -3'
miRNA:   3'- -GGGaCUCCGa---CAGa---GGgUgUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 36424 0.68 0.579081
Target:  5'- uUCCgaggGAGaGCUGgcgUCCauaguCGCAGAGGCCg -3'
miRNA:   3'- -GGGa---CUC-CGACag-AGG-----GUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 17034 0.71 0.452391
Target:  5'- aCCUcGAGGgagGUCUCCCcgACAcugucGAGGCCa -3'
miRNA:   3'- gGGA-CUCCga-CAGAGGG--UGU-----CUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 92532 0.71 0.416455
Target:  5'- gCUCUG-GGCUGcCUCCUccucGCGGGGuGCCu -3'
miRNA:   3'- -GGGACuCCGACaGAGGG----UGUCUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 5260 0.72 0.390677
Target:  5'- aCgCUGAGGUUGUCgUCCUGCAuGGcGCCg -3'
miRNA:   3'- -GgGACUCCGACAG-AGGGUGUcUC-CGG- -5'
27176 5' -58.6 NC_005832.1 + 20486 0.66 0.750956
Target:  5'- cCCUUGAuGCUGUaaCCCGCcacccaAGGGGCg -3'
miRNA:   3'- -GGGACUcCGACAgaGGGUG------UCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 652 0.75 0.24755
Target:  5'- cCCCgccgGGGGCUGgugcagaaagugguaCUcggCCCACAGGGGCCc -3'
miRNA:   3'- -GGGa---CUCCGACa--------------GA---GGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 39575 0.75 0.252362
Target:  5'- cCCCUGAGGCccagccgCUCCCACGGAcccgaccGGaCCg -3'
miRNA:   3'- -GGGACUCCGaca----GAGGGUGUCU-------CC-GG- -5'
27176 5' -58.6 NC_005832.1 + 42658 0.75 0.27174
Target:  5'- gCCCUuGGaGUUGcgguccUCUUCCACAGAGGCCc -3'
miRNA:   3'- -GGGAcUC-CGAC------AGAGGGUGUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 95568 0.74 0.298487
Target:  5'- gCCgacuacggGAGGCUGUCUCCgaUACGGucGCCg -3'
miRNA:   3'- gGGa-------CUCCGACAGAGG--GUGUCucCGG- -5'
27176 5' -58.6 NC_005832.1 + 103783 0.73 0.350097
Target:  5'- uCUCUGuGGUUGacggCUCCCGacuguauguCGGAGGCCa -3'
miRNA:   3'- -GGGACuCCGACa---GAGGGU---------GUCUCCGG- -5'
27176 5' -58.6 NC_005832.1 + 58533 0.72 0.38149
Target:  5'- aCCCUuGGGCcacaguuUGUCUCCUagccuccuagugACAGAGGCg -3'
miRNA:   3'- -GGGAcUCCG-------ACAGAGGG------------UGUCUCCGg -5'
27176 5' -58.6 NC_005832.1 + 100394 0.72 0.382319
Target:  5'- aCCCauaaaggaaaUGAGGCUGUCUgaCCu--GAGGCCc -3'
miRNA:   3'- -GGG----------ACUCCGACAGAg-GGuguCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.