miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2719 5' -51.1 NC_001491.2 + 137709 0.66 0.99208
Target:  5'- cGGGgcGGCGUcgc-GGCGGCgGCCGUg -3'
miRNA:   3'- -CCCuuUCGCAcuuaCUGUCG-CGGUAg -5'
2719 5' -51.1 NC_001491.2 + 10583 0.66 0.99208
Target:  5'- cGGGcaGAAGCGcau-UGACGGCaGCCAg- -3'
miRNA:   3'- -CCC--UUUCGCacuuACUGUCG-CGGUag -5'
2719 5' -51.1 NC_001491.2 + 82435 0.66 0.99208
Target:  5'- cGGGAggAAGCGgugcGAcucccagGGCGGCgGCUAUCa -3'
miRNA:   3'- -CCCU--UUCGCa---CUua-----CUGUCG-CGGUAG- -5'
2719 5' -51.1 NC_001491.2 + 138516 0.66 0.988161
Target:  5'- cGGGAGAGUGcUGGGguccgcgcugcUGGCaucGGCGgCGUCg -3'
miRNA:   3'- -CCCUUUCGC-ACUU-----------ACUG---UCGCgGUAG- -5'
2719 5' -51.1 NC_001491.2 + 58047 0.66 0.988008
Target:  5'- gGGGAAAGaggacucCGUGAuacugcuUGACgagaaacccgacGGCGCCAUUc -3'
miRNA:   3'- -CCCUUUC-------GCACUu------ACUG------------UCGCGGUAG- -5'
2719 5' -51.1 NC_001491.2 + 146139 0.66 0.987541
Target:  5'- aGGAcccguguccgcgcgGAGCGUGGAUGAacuucuggcagaaCuGCGCCAg- -3'
miRNA:   3'- cCCU--------------UUCGCACUUACU-------------GuCGCGGUag -5'
2719 5' -51.1 NC_001491.2 + 71354 0.66 0.986565
Target:  5'- uGGGAcGGGCGU---UGAcCAGacaGCCAUCg -3'
miRNA:   3'- -CCCU-UUCGCAcuuACU-GUCg--CGGUAG- -5'
2719 5' -51.1 NC_001491.2 + 12265 0.67 0.980779
Target:  5'- aGGcAGGCGaGAAUGGcCAGCGUCAc- -3'
miRNA:   3'- cCCuUUCGCaCUUACU-GUCGCGGUag -5'
2719 5' -51.1 NC_001491.2 + 141237 0.67 0.978488
Target:  5'- gGGGAgGAGUGUGAcGUGAgCGGCGacgaGUCg -3'
miRNA:   3'- -CCCU-UUCGCACU-UACU-GUCGCgg--UAG- -5'
2719 5' -51.1 NC_001491.2 + 83107 0.67 0.975215
Target:  5'- gGGGAgggugagguuacaaAAGCGUuuGAAUGACAGgGgCCuUCu -3'
miRNA:   3'- -CCCU--------------UUCGCA--CUUACUGUCgC-GGuAG- -5'
2719 5' -51.1 NC_001491.2 + 92533 0.68 0.973308
Target:  5'- uGGGGuuuGCGaacaccgGAAccGACAGCGCCAa- -3'
miRNA:   3'- -CCCUuu-CGCa------CUUa-CUGUCGCGGUag -5'
2719 5' -51.1 NC_001491.2 + 54415 0.68 0.970404
Target:  5'- aGGGGAGCGUGGacGUGACcacGCgGCUGUUg -3'
miRNA:   3'- cCCUUUCGCACU--UACUGu--CG-CGGUAG- -5'
2719 5' -51.1 NC_001491.2 + 40211 0.68 0.967281
Target:  5'- cGGAAGacaCGUGuuUGGCGGCgGCUAUCg -3'
miRNA:   3'- cCCUUUc--GCACuuACUGUCG-CGGUAG- -5'
2719 5' -51.1 NC_001491.2 + 122927 0.69 0.952464
Target:  5'- cGGGGAGCcguuGUGGacGUGGCcguacGCGCCGUCc -3'
miRNA:   3'- cCCUUUCG----CACU--UACUGu----CGCGGUAG- -5'
2719 5' -51.1 NC_001491.2 + 63885 0.69 0.938771
Target:  5'- -uGAGAGCGUGGAgcUGguuGCGGCGCUGUa -3'
miRNA:   3'- ccCUUUCGCACUU--AC---UGUCGCGGUAg -5'
2719 5' -51.1 NC_001491.2 + 112575 0.7 0.916929
Target:  5'- gGGGggGGUGUG-GUGGuaaaUAGCGgCAUCc -3'
miRNA:   3'- -CCCuuUCGCACuUACU----GUCGCgGUAG- -5'
2719 5' -51.1 NC_001491.2 + 65468 0.7 0.916929
Target:  5'- cGGGGAAGCcccg--GGCAGUGCCAa- -3'
miRNA:   3'- -CCCUUUCGcacuuaCUGUCGCGGUag -5'
2719 5' -51.1 NC_001491.2 + 122673 0.72 0.868944
Target:  5'- gGGGAuuGgGUG--UGAUGGCGCUGUCa -3'
miRNA:   3'- -CCCUuuCgCACuuACUGUCGCGGUAG- -5'
2719 5' -51.1 NC_001491.2 + 119086 0.72 0.853091
Target:  5'- gGGGAGAGCGUuagaGAAcggGGCgAGUGCCAa- -3'
miRNA:   3'- -CCCUUUCGCA----CUUa--CUG-UCGCGGUag -5'
2719 5' -51.1 NC_001491.2 + 13922 0.74 0.732056
Target:  5'- gGGGcuGGCGgccuugGGcgGUGGCAGCGCCAg- -3'
miRNA:   3'- -CCCuuUCGCa-----CU--UACUGUCGCGGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.