miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2721 5' -49.5 NC_001491.2 + 142134 1.1 0.009707
Target:  5'- uUAACGUGCAUCCACACCACGGAAAACa -3'
miRNA:   3'- -AUUGCACGUAGGUGUGGUGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 58796 0.74 0.833609
Target:  5'- aAGCGUGCAggacugCCgcaaACACCGCGGucuGAACc -3'
miRNA:   3'- aUUGCACGUa-----GG----UGUGGUGCCu--UUUG- -5'
2721 5' -49.5 NC_001491.2 + 23719 0.73 0.867039
Target:  5'- -uGCGUGCAUgCGCACCuuuACGGAc--- -3'
miRNA:   3'- auUGCACGUAgGUGUGG---UGCCUuuug -5'
2721 5' -49.5 NC_001491.2 + 62393 0.72 0.908059
Target:  5'- uUGACGUguagugccuccaugGCAUCCACcCCACGuAAGACg -3'
miRNA:   3'- -AUUGCA--------------CGUAGGUGuGGUGCcUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 138922 0.72 0.916238
Target:  5'- ---aGUGUAcccaccaaaacUCCaACACCACGGAAAAUa -3'
miRNA:   3'- auugCACGU-----------AGG-UGUGGUGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 58459 0.72 0.916238
Target:  5'- aAACGUGCccGUCCACGCgGcCGGGuuAGACc -3'
miRNA:   3'- aUUGCACG--UAGGUGUGgU-GCCU--UUUG- -5'
2721 5' -49.5 NC_001491.2 + 68566 0.7 0.960546
Target:  5'- --uUGUGag-CCGCGCCGCGGGcgGCu -3'
miRNA:   3'- auuGCACguaGGUGUGGUGCCUuuUG- -5'
2721 5' -49.5 NC_001491.2 + 41714 0.69 0.967246
Target:  5'- cUGAUGgGCAUCCACGaacccauCCAUGGAAAc- -3'
miRNA:   3'- -AUUGCaCGUAGGUGU-------GGUGCCUUUug -5'
2721 5' -49.5 NC_001491.2 + 94552 0.69 0.968866
Target:  5'- cAGCGUaGUAUCUcgauaacucgccaugGCACgACGGGGAGCa -3'
miRNA:   3'- aUUGCA-CGUAGG---------------UGUGgUGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 141778 0.69 0.978882
Target:  5'- gGGCGUGCGacggauccugCCGCaugGCCcaGCGGggGACg -3'
miRNA:   3'- aUUGCACGUa---------GGUG---UGG--UGCCuuUUG- -5'
2721 5' -49.5 NC_001491.2 + 146630 0.69 0.978882
Target:  5'- gGACG-GCGgacgCCcCGCCGCGGAGGcGCa -3'
miRNA:   3'- aUUGCaCGUa---GGuGUGGUGCCUUU-UG- -5'
2721 5' -49.5 NC_001491.2 + 23400 0.68 0.981182
Target:  5'- aGGCGaguuccgGCAUCCACuCCACGGcccACg -3'
miRNA:   3'- aUUGCa------CGUAGGUGuGGUGCCuuuUG- -5'
2721 5' -49.5 NC_001491.2 + 39392 0.68 0.98329
Target:  5'- cUGACGaauCAuuucuUCCGCGCCACGGAuAAUa -3'
miRNA:   3'- -AUUGCac-GU-----AGGUGUGGUGCCUuUUG- -5'
2721 5' -49.5 NC_001491.2 + 141522 0.68 0.985214
Target:  5'- cGAUGUGaa-CCGCcUCGCGGggGACg -3'
miRNA:   3'- aUUGCACguaGGUGuGGUGCCuuUUG- -5'
2721 5' -49.5 NC_001491.2 + 138045 0.68 0.98855
Target:  5'- cGGCGaGCGagCGCGCaGCGGAAGACc -3'
miRNA:   3'- aUUGCaCGUagGUGUGgUGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 80802 0.67 0.989983
Target:  5'- cGGCGUGCu---GCGCCACGGGuugucuGACu -3'
miRNA:   3'- aUUGCACGuaggUGUGGUGCCUu-----UUG- -5'
2721 5' -49.5 NC_001491.2 + 54347 0.67 0.991271
Target:  5'- -cGCcUGCGaCCcgGCAcCCACGGAGAGCg -3'
miRNA:   3'- auUGcACGUaGG--UGU-GGUGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 88409 0.67 0.991271
Target:  5'- gGACGU---UCC-CACCuACGGGAAGCa -3'
miRNA:   3'- aUUGCAcguAGGuGUGG-UGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 147687 0.67 0.991271
Target:  5'- gAGCGccggGCG-CCAgGCCuCGGGGAACa -3'
miRNA:   3'- aUUGCa---CGUaGGUgUGGuGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 85996 0.67 0.992424
Target:  5'- cAGCG-GCGUCaaaCGCgGCCACGGGcgGCg -3'
miRNA:   3'- aUUGCaCGUAG---GUG-UGGUGCCUuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.