miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2721 5' -49.5 NC_001491.2 + 11907 0.66 0.997053
Target:  5'- aAGCG-GUacaAUUCGCACCugGGAucAACa -3'
miRNA:   3'- aUUGCaCG---UAGGUGUGGugCCUu-UUG- -5'
2721 5' -49.5 NC_001491.2 + 23400 0.68 0.981182
Target:  5'- aGGCGaguuccgGCAUCCACuCCACGGcccACg -3'
miRNA:   3'- aUUGCa------CGUAGGUGuGGUGCCuuuUG- -5'
2721 5' -49.5 NC_001491.2 + 23719 0.73 0.867039
Target:  5'- -uGCGUGCAUgCGCACCuuuACGGAc--- -3'
miRNA:   3'- auUGCACGUAgGUGUGG---UGCCUuuug -5'
2721 5' -49.5 NC_001491.2 + 35229 0.67 0.993453
Target:  5'- aUGGCGUuaaacGCGUCCAgCACCACcguGGcuAGCa -3'
miRNA:   3'- -AUUGCA-----CGUAGGU-GUGGUG---CCuuUUG- -5'
2721 5' -49.5 NC_001491.2 + 39392 0.68 0.98329
Target:  5'- cUGACGaauCAuuucuUCCGCGCCACGGAuAAUa -3'
miRNA:   3'- -AUUGCac-GU-----AGGUGUGGUGCCUuUUG- -5'
2721 5' -49.5 NC_001491.2 + 41714 0.69 0.967246
Target:  5'- cUGAUGgGCAUCCACGaacccauCCAUGGAAAc- -3'
miRNA:   3'- -AUUGCaCGUAGGUGU-------GGUGCCUUUug -5'
2721 5' -49.5 NC_001491.2 + 43247 0.67 0.994367
Target:  5'- ----cUGgGUCCAcCGCCACGGAAGu- -3'
miRNA:   3'- auugcACgUAGGU-GUGGUGCCUUUug -5'
2721 5' -49.5 NC_001491.2 + 47684 0.67 0.994367
Target:  5'- aAGCG-GCGUcCCACGCCcaaGCGGu--GCg -3'
miRNA:   3'- aUUGCaCGUA-GGUGUGG---UGCCuuuUG- -5'
2721 5' -49.5 NC_001491.2 + 49232 0.66 0.997524
Target:  5'- aUAAUcUGCuAUCCACugUggGGAAAGCc -3'
miRNA:   3'- -AUUGcACG-UAGGUGugGugCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 54347 0.67 0.991271
Target:  5'- -cGCcUGCGaCCcgGCAcCCACGGAGAGCg -3'
miRNA:   3'- auUGcACGUaGG--UGU-GGUGCCUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 58459 0.72 0.916238
Target:  5'- aAACGUGCccGUCCACGCgGcCGGGuuAGACc -3'
miRNA:   3'- aUUGCACG--UAGGUGUGgU-GCCU--UUUG- -5'
2721 5' -49.5 NC_001491.2 + 58796 0.74 0.833609
Target:  5'- aAGCGUGCAggacugCCgcaaACACCGCGGucuGAACc -3'
miRNA:   3'- aUUGCACGUa-----GG----UGUGGUGCCu--UUUG- -5'
2721 5' -49.5 NC_001491.2 + 62393 0.72 0.908059
Target:  5'- uUGACGUguagugccuccaugGCAUCCACcCCACGuAAGACg -3'
miRNA:   3'- -AUUGCA--------------CGUAGGUGuGGUGCcUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 65312 0.66 0.996509
Target:  5'- ---aGUGCGUCCACcgGCCugGaGuuuGGGCg -3'
miRNA:   3'- auugCACGUAGGUG--UGGugC-Cu--UUUG- -5'
2721 5' -49.5 NC_001491.2 + 68566 0.7 0.960546
Target:  5'- --uUGUGag-CCGCGCCGCGGGcgGCu -3'
miRNA:   3'- auuGCACguaGGUGUGGUGCCUuuUG- -5'
2721 5' -49.5 NC_001491.2 + 69457 0.66 0.996509
Target:  5'- --cCGUGCuAUCCuGCACCauaucacguuugGCGGAAuACg -3'
miRNA:   3'- auuGCACG-UAGG-UGUGG------------UGCCUUuUG- -5'
2721 5' -49.5 NC_001491.2 + 79692 0.66 0.997053
Target:  5'- gAACGUGCGUUCGCuaccgugaaucACCGCcucGAGGAUg -3'
miRNA:   3'- aUUGCACGUAGGUG-----------UGGUGc--CUUUUG- -5'
2721 5' -49.5 NC_001491.2 + 80802 0.67 0.989983
Target:  5'- cGGCGUGCu---GCGCCACGGGuugucuGACu -3'
miRNA:   3'- aUUGCACGuaggUGUGGUGCCUu-----UUG- -5'
2721 5' -49.5 NC_001491.2 + 85996 0.67 0.992424
Target:  5'- cAGCG-GCGUCaaaCGCgGCCACGGGcgGCg -3'
miRNA:   3'- aUUGCaCGUAG---GUG-UGGUGCCUuuUG- -5'
2721 5' -49.5 NC_001491.2 + 88409 0.67 0.991271
Target:  5'- gGACGU---UCC-CACCuACGGGAAGCa -3'
miRNA:   3'- aUUGCAcguAGGuGUGG-UGCCUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.