Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27217 | 3' | -58.8 | NC_005832.1 | + | 52493 | 0.72 | 0.402572 |
Target: 5'- gCCUCCCGUUgACGAcGuGACCCaCGUgCa -3' miRNA: 3'- aGGAGGGCAGaUGCU-C-CUGGG-GCAgG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 53854 | 0.71 | 0.486684 |
Target: 5'- aCCUCCCG-CUcACGgcaccgccagggagaGGGGCUCCGUUCu -3' miRNA: 3'- aGGAGGGCaGA-UGC---------------UCCUGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 54164 | 0.67 | 0.719622 |
Target: 5'- cCCUCCUGUUUguuaggACGAGGgcgggcaGCCCCagccUCCu -3' miRNA: 3'- aGGAGGGCAGA------UGCUCC-------UGGGGc---AGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 54277 | 0.69 | 0.580236 |
Target: 5'- gUCCUCuuGUCUGUGAGG-CCCUcUCa -3' miRNA: 3'- -AGGAGggCAGAUGCUCCuGGGGcAGg -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 54854 | 0.72 | 0.4197 |
Target: 5'- gUCCUCUCGcagGCGucGaACCCCGUCCc -3' miRNA: 3'- -AGGAGGGCagaUGCucC-UGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 58253 | 0.67 | 0.720601 |
Target: 5'- gUCCUCCUGauagcuccUCUGCGAG-ACCC--UCCa -3' miRNA: 3'- -AGGAGGGC--------AGAUGCUCcUGGGgcAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 58287 | 0.81 | 0.113207 |
Target: 5'- uUUCUCCCagagaCUAUGAGGACCUCGUCCu -3' miRNA: 3'- -AGGAGGGca---GAUGCUCCUGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 65322 | 0.69 | 0.600316 |
Target: 5'- gUCCUCCUGUUUACcGGGccguaGCCCUGaagcUCCc -3' miRNA: 3'- -AGGAGGGCAGAUGcUCC-----UGGGGC----AGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 67003 | 0.68 | 0.640693 |
Target: 5'- uUCCUCCCGUCUcCcuuaAGaACCCUGaUCCu -3' miRNA: 3'- -AGGAGGGCAGAuGc---UCcUGGGGC-AGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 67012 | 0.79 | 0.161786 |
Target: 5'- aCgUCCCG-CUGCGAGGGCCCUGgcggcggCCg -3' miRNA: 3'- aGgAGGGCaGAUGCUCCUGGGGCa------GG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 68921 | 0.67 | 0.720601 |
Target: 5'- -gCUCCCGUCguaGA-GACCCCGcacUCUg -3' miRNA: 3'- agGAGGGCAGaugCUcCUGGGGC---AGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 74880 | 0.68 | 0.640693 |
Target: 5'- --gUCCC-UCUACG-GGGCCCUGgCCg -3' miRNA: 3'- aggAGGGcAGAUGCuCCUGGGGCaGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 75266 | 0.68 | 0.63059 |
Target: 5'- aCCUCauagaGUUUaucaccAUGAGGACCCCGaCCg -3' miRNA: 3'- aGGAGgg---CAGA------UGCUCCUGGGGCaGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 75965 | 0.66 | 0.749584 |
Target: 5'- gCCUCCUcagaGUCgaaGGGGAUCCUGUgCu -3' miRNA: 3'- aGGAGGG----CAGaugCUCCUGGGGCAgG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 80675 | 1.11 | 0.001009 |
Target: 5'- gUCCUCCCGUCUACGAGGACCCCGUCCc -3' miRNA: 3'- -AGGAGGGCAGAUGCUCCUGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 81268 | 0.66 | 0.730348 |
Target: 5'- cCCguUCCCaGUCUACGAcGGCCCUccuaGUCUu -3' miRNA: 3'- aGG--AGGG-CAGAUGCUcCUGGGG----CAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 87447 | 0.67 | 0.680962 |
Target: 5'- -aCUCCCGUC-ACuGGGGCCUCGg-- -3' miRNA: 3'- agGAGGGCAGaUGcUCCUGGGGCagg -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 87467 | 0.68 | 0.620487 |
Target: 5'- gUCUCCCaccucGUCUccaggauggacGCGAGGACCagggcagCGUCCu -3' miRNA: 3'- aGGAGGG-----CAGA-----------UGCUCCUGGg------GCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 90426 | 0.69 | 0.600316 |
Target: 5'- gCCUCCCGUCccucAGGcACCCC-UCCc -3' miRNA: 3'- aGGAGGGCAGaugcUCC-UGGGGcAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 91202 | 0.66 | 0.730348 |
Target: 5'- gCCUgUCGUCgGCGAGGuCCgCCGUg- -3' miRNA: 3'- aGGAgGGCAGaUGCUCCuGG-GGCAgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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