Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27217 | 3' | -58.8 | NC_005832.1 | + | 2668 | 0.7 | 0.521057 |
Target: 5'- gCCUgUgGaCUaugGCGAGGACCCUGUCUa -3' miRNA: 3'- aGGAgGgCaGA---UGCUCCUGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 5139 | 0.69 | 0.5603 |
Target: 5'- aUCCcuuUCCC--CUGCccAGGACCCUGUCCa -3' miRNA: 3'- -AGG---AGGGcaGAUGc-UCCUGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 7715 | 0.66 | 0.759056 |
Target: 5'- cUCCUCCU---UugGAGuGACgCUGUCCu -3' miRNA: 3'- -AGGAGGGcagAugCUC-CUGgGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 9320 | 0.68 | 0.610394 |
Target: 5'- -aCUCCUGgCcGCGAGGAacucuaggguguCCUCGUCCg -3' miRNA: 3'- agGAGGGCaGaUGCUCCU------------GGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 10939 | 0.72 | 0.402572 |
Target: 5'- gUCUCCCGagUugGAGaauAUCCCGUCCu -3' miRNA: 3'- aGGAGGGCagAugCUCc--UGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 20385 | 0.66 | 0.762815 |
Target: 5'- gUCCUCCCagaggguUCcACGGGGGCCCucagaggaggguuagCGUCg -3' miRNA: 3'- -AGGAGGGc------AGaUGCUCCUGGG---------------GCAGg -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 26552 | 0.66 | 0.740012 |
Target: 5'- cCCUCuUUGUCUACaaGAGGcuccAUCCCGUCg -3' miRNA: 3'- aGGAG-GGCAGAUG--CUCC----UGGGGCAGg -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 35285 | 0.76 | 0.245351 |
Target: 5'- gCUUCCaCGUCg--GAGGGCCCCuGUCCg -3' miRNA: 3'- aGGAGG-GCAGaugCUCCUGGGG-CAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 40877 | 0.66 | 0.759056 |
Target: 5'- gCCaggUCCGUCUuuACcAGGGCCCUG-CCa -3' miRNA: 3'- aGGa--GGGCAGA--UGcUCCUGGGGCaGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 42390 | 0.69 | 0.554355 |
Target: 5'- cCCUCCucauggagcagcacgCGUCcgccccCGAGGACCCCGUg- -3' miRNA: 3'- aGGAGG---------------GCAGau----GCUCCUGGGGCAgg -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 43390 | 0.73 | 0.346244 |
Target: 5'- gUCa-CCUGUC-ACGccgcacAGGACCCCGUCCa -3' miRNA: 3'- -AGgaGGGCAGaUGC------UCCUGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 43962 | 0.68 | 0.654826 |
Target: 5'- gCCUCCCGcCgucAUGAuggccaccaccggcaGGGCCCCGUgggCCa -3' miRNA: 3'- aGGAGGGCaGa--UGCU---------------CCUGGGGCA---GG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 44053 | 0.7 | 0.492341 |
Target: 5'- ---aCCCGUUgugcGCGGGGGCCCuCGUCa -3' miRNA: 3'- aggaGGGCAGa---UGCUCCUGGG-GCAGg -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 44063 | 0.71 | 0.48293 |
Target: 5'- cUCCUCuuGUCgGCGcAGGACaCgGUCCu -3' miRNA: 3'- -AGGAGggCAGaUGC-UCCUGgGgCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 44191 | 0.7 | 0.521057 |
Target: 5'- cCCUCCUG---ACGAGGGCCCCcgcgcacaacggGUCUa -3' miRNA: 3'- aGGAGGGCagaUGCUCCUGGGG------------CAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 44245 | 0.68 | 0.640693 |
Target: 5'- cUCCUCCCGUCcuUugGuccacGGGCCUCuuggCCg -3' miRNA: 3'- -AGGAGGGCAG--AugCu----CCUGGGGca--GG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 44779 | 0.73 | 0.374494 |
Target: 5'- cUCCUgCCCGUCgagcccgaguaGAGGACgCUGUCCc -3' miRNA: 3'- -AGGA-GGGCAGaug--------CUCCUGgGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 49234 | 0.68 | 0.610394 |
Target: 5'- aCCUCUCaaagggagagguGUUguacuCGAGGAUCUCGUCCg -3' miRNA: 3'- aGGAGGG------------CAGau---GCUCCUGGGGCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 50982 | 0.69 | 0.5603 |
Target: 5'- gUCUCCCugcUCUcCGguAGGACCCgGUCCu -3' miRNA: 3'- aGGAGGGc--AGAuGC--UCCUGGGgCAGG- -5' |
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27217 | 3' | -58.8 | NC_005832.1 | + | 52043 | 0.68 | 0.634632 |
Target: 5'- uUUCUgaCCUGUCUGCGAuGGCCCucagccucugcacugCGUCCa -3' miRNA: 3'- -AGGA--GGGCAGAUGCUcCUGGG---------------GCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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