miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27217 3' -58.8 NC_005832.1 + 7715 0.66 0.759056
Target:  5'- cUCCUCCU---UugGAGuGACgCUGUCCu -3'
miRNA:   3'- -AGGAGGGcagAugCUC-CUGgGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 9320 0.68 0.610394
Target:  5'- -aCUCCUGgCcGCGAGGAacucuaggguguCCUCGUCCg -3'
miRNA:   3'- agGAGGGCaGaUGCUCCU------------GGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 87467 0.68 0.620487
Target:  5'- gUCUCCCaccucGUCUccaggauggacGCGAGGACCagggcagCGUCCu -3'
miRNA:   3'- aGGAGGG-----CAGA-----------UGCUCCUGGg------GCAGG- -5'
27217 3' -58.8 NC_005832.1 + 75266 0.68 0.63059
Target:  5'- aCCUCauagaGUUUaucaccAUGAGGACCCCGaCCg -3'
miRNA:   3'- aGGAGgg---CAGA------UGCUCCUGGGGCaGG- -5'
27217 3' -58.8 NC_005832.1 + 52043 0.68 0.634632
Target:  5'- uUUCUgaCCUGUCUGCGAuGGCCCucagccucugcacugCGUCCa -3'
miRNA:   3'- -AGGA--GGGCAGAUGCUcCUGGG---------------GCAGG- -5'
27217 3' -58.8 NC_005832.1 + 74880 0.68 0.640693
Target:  5'- --gUCCC-UCUACG-GGGCCCUGgCCg -3'
miRNA:   3'- aggAGGGcAGAUGCuCCUGGGGCaGG- -5'
27217 3' -58.8 NC_005832.1 + 95676 0.68 0.640693
Target:  5'- -aCUCCC-UCU-CGAGGGCCCUGa-- -3'
miRNA:   3'- agGAGGGcAGAuGCUCCUGGGGCagg -5'
27217 3' -58.8 NC_005832.1 + 68921 0.67 0.720601
Target:  5'- -gCUCCCGUCguaGA-GACCCCGcacUCUg -3'
miRNA:   3'- agGAGGGCAGaugCUcCUGGGGC---AGG- -5'
27217 3' -58.8 NC_005832.1 + 91202 0.66 0.730348
Target:  5'- gCCUgUCGUCgGCGAGGuCCgCCGUg- -3'
miRNA:   3'- aGGAgGGCAGaUGCUCCuGG-GGCAgg -5'
27217 3' -58.8 NC_005832.1 + 95448 0.68 0.607369
Target:  5'- gCCUCCCGUagucggcgcacuccCUcuCGAGGGCCCUGa-- -3'
miRNA:   3'- aGGAGGGCA--------------GAu-GCUCCUGGGGCagg -5'
27217 3' -58.8 NC_005832.1 + 90426 0.69 0.600316
Target:  5'- gCCUCCCGUCccucAGGcACCCC-UCCc -3'
miRNA:   3'- aGGAGGGCAGaugcUCC-UGGGGcAGG- -5'
27217 3' -58.8 NC_005832.1 + 54277 0.69 0.580236
Target:  5'- gUCCUCuuGUCUGUGAGG-CCCUcUCa -3'
miRNA:   3'- -AGGAGggCAGAUGCUCCuGGGGcAGg -5'
27217 3' -58.8 NC_005832.1 + 67012 0.79 0.161786
Target:  5'- aCgUCCCG-CUGCGAGGGCCCUGgcggcggCCg -3'
miRNA:   3'- aGgAGGGCaGAUGCUCCUGGGGCa------GG- -5'
27217 3' -58.8 NC_005832.1 + 10939 0.72 0.402572
Target:  5'- gUCUCCCGagUugGAGaauAUCCCGUCCu -3'
miRNA:   3'- aGGAGGGCagAugCUCc--UGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 52493 0.72 0.402572
Target:  5'- gCCUCCCGUUgACGAcGuGACCCaCGUgCa -3'
miRNA:   3'- aGGAGGGCAGaUGCU-C-CUGGG-GCAgG- -5'
27217 3' -58.8 NC_005832.1 + 53854 0.71 0.486684
Target:  5'- aCCUCCCG-CUcACGgcaccgccagggagaGGGGCUCCGUUCu -3'
miRNA:   3'- aGGAGGGCaGA-UGC---------------UCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 44053 0.7 0.492341
Target:  5'- ---aCCCGUUgugcGCGGGGGCCCuCGUCa -3'
miRNA:   3'- aggaGGGCAGa---UGCUCCUGGG-GCAGg -5'
27217 3' -58.8 NC_005832.1 + 2668 0.7 0.521057
Target:  5'- gCCUgUgGaCUaugGCGAGGACCCUGUCUa -3'
miRNA:   3'- aGGAgGgCaGA---UGCUCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 42390 0.69 0.554355
Target:  5'- cCCUCCucauggagcagcacgCGUCcgccccCGAGGACCCCGUg- -3'
miRNA:   3'- aGGAGG---------------GCAGau----GCUCCUGGGGCAgg -5'
27217 3' -58.8 NC_005832.1 + 50982 0.69 0.5603
Target:  5'- gUCUCCCugcUCUcCGguAGGACCCgGUCCu -3'
miRNA:   3'- aGGAGGGc--AGAuGC--UCCUGGGgCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.