miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27217 3' -58.8 NC_005832.1 + 80675 1.11 0.001009
Target:  5'- gUCCUCCCGUCUACGAGGACCCCGUCCc -3'
miRNA:   3'- -AGGAGGGCAGAUGCUCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 58287 0.81 0.113207
Target:  5'- uUUCUCCCagagaCUAUGAGGACCUCGUCCu -3'
miRNA:   3'- -AGGAGGGca---GAUGCUCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 67012 0.79 0.161786
Target:  5'- aCgUCCCG-CUGCGAGGGCCCUGgcggcggCCg -3'
miRNA:   3'- aGgAGGGCaGAUGCUCCUGGGGCa------GG- -5'
27217 3' -58.8 NC_005832.1 + 35285 0.76 0.245351
Target:  5'- gCUUCCaCGUCg--GAGGGCCCCuGUCCg -3'
miRNA:   3'- aGGAGG-GCAGaugCUCCUGGGG-CAGG- -5'
27217 3' -58.8 NC_005832.1 + 43390 0.73 0.346244
Target:  5'- gUCa-CCUGUC-ACGccgcacAGGACCCCGUCCa -3'
miRNA:   3'- -AGgaGGGCAGaUGC------UCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 44779 0.73 0.374494
Target:  5'- cUCCUgCCCGUCgagcccgaguaGAGGACgCUGUCCc -3'
miRNA:   3'- -AGGA-GGGCAGaug--------CUCCUGgGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 10939 0.72 0.402572
Target:  5'- gUCUCCCGagUugGAGaauAUCCCGUCCu -3'
miRNA:   3'- aGGAGGGCagAugCUCc--UGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 52493 0.72 0.402572
Target:  5'- gCCUCCCGUUgACGAcGuGACCCaCGUgCa -3'
miRNA:   3'- aGGAGGGCAGaUGCU-C-CUGGG-GCAgG- -5'
27217 3' -58.8 NC_005832.1 + 54854 0.72 0.4197
Target:  5'- gUCCUCUCGcagGCGucGaACCCCGUCCc -3'
miRNA:   3'- -AGGAGGGCagaUGCucC-UGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 44063 0.71 0.48293
Target:  5'- cUCCUCuuGUCgGCGcAGGACaCgGUCCu -3'
miRNA:   3'- -AGGAGggCAGaUGC-UCCUGgGgCAGG- -5'
27217 3' -58.8 NC_005832.1 + 53854 0.71 0.486684
Target:  5'- aCCUCCCG-CUcACGgcaccgccagggagaGGGGCUCCGUUCu -3'
miRNA:   3'- aGGAGGGCaGA-UGC---------------UCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 44053 0.7 0.492341
Target:  5'- ---aCCCGUUgugcGCGGGGGCCCuCGUCa -3'
miRNA:   3'- aggaGGGCAGa---UGCUCCUGGG-GCAGg -5'
27217 3' -58.8 NC_005832.1 + 2668 0.7 0.521057
Target:  5'- gCCUgUgGaCUaugGCGAGGACCCUGUCUa -3'
miRNA:   3'- aGGAgGgCaGA---UGCUCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 44191 0.7 0.521057
Target:  5'- cCCUCCUG---ACGAGGGCCCCcgcgcacaacggGUCUa -3'
miRNA:   3'- aGGAGGGCagaUGCUCCUGGGG------------CAGG- -5'
27217 3' -58.8 NC_005832.1 + 42390 0.69 0.554355
Target:  5'- cCCUCCucauggagcagcacgCGUCcgccccCGAGGACCCCGUg- -3'
miRNA:   3'- aGGAGG---------------GCAGau----GCUCCUGGGGCAgg -5'
27217 3' -58.8 NC_005832.1 + 5139 0.69 0.5603
Target:  5'- aUCCcuuUCCC--CUGCccAGGACCCUGUCCa -3'
miRNA:   3'- -AGG---AGGGcaGAUGc-UCCUGGGGCAGG- -5'
27217 3' -58.8 NC_005832.1 + 50982 0.69 0.5603
Target:  5'- gUCUCCCugcUCUcCGguAGGACCCgGUCCu -3'
miRNA:   3'- aGGAGGGc--AGAuGC--UCCUGGGgCAGG- -5'
27217 3' -58.8 NC_005832.1 + 54277 0.69 0.580236
Target:  5'- gUCCUCuuGUCUGUGAGG-CCCUcUCa -3'
miRNA:   3'- -AGGAGggCAGAUGCUCCuGGGGcAGg -5'
27217 3' -58.8 NC_005832.1 + 65322 0.69 0.600316
Target:  5'- gUCCUCCUGUUUACcGGGccguaGCCCUGaagcUCCc -3'
miRNA:   3'- -AGGAGGGCAGAUGcUCC-----UGGGGC----AGG- -5'
27217 3' -58.8 NC_005832.1 + 90426 0.69 0.600316
Target:  5'- gCCUCCCGUCccucAGGcACCCC-UCCc -3'
miRNA:   3'- aGGAGGGCAGaugcUCC-UGGGGcAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.