miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27219 3' -53.4 NC_005832.1 + 62228 0.66 0.9068
Target:  5'- cCACUGGaacCUGCUGGUucuCAGgaGGUGg -3'
miRNA:   3'- cGUGAUU---GACGACCAc--GUCgaCCACg -5'
27219 3' -53.4 NC_005832.1 + 32745 0.66 0.900173
Target:  5'- ----gGACgagGCggUGGUGCGGUcgUGGUGCu -3'
miRNA:   3'- cgugaUUGa--CG--ACCACGUCG--ACCACG- -5'
27219 3' -53.4 NC_005832.1 + 32931 0.67 0.878756
Target:  5'- ----gGACgagGCggUGGUGCAGUcgUGGUGCc -3'
miRNA:   3'- cgugaUUGa--CG--ACCACGUCG--ACCACG- -5'
27219 3' -53.4 NC_005832.1 + 17986 0.67 0.878756
Target:  5'- gGCGCU-GCUGCUGcUGCAcagggcguugcuGCUGcUGCa -3'
miRNA:   3'- -CGUGAuUGACGACcACGU------------CGACcACG- -5'
27219 3' -53.4 NC_005832.1 + 18028 0.67 0.863245
Target:  5'- gGCGCU-GCUGCUGcUGCAcagggcGCUGcUGCu -3'
miRNA:   3'- -CGUGAuUGACGACcACGU------CGACcACG- -5'
27219 3' -53.4 NC_005832.1 + 17919 0.68 0.829499
Target:  5'- uCGCU-GCUGCUGcUGCuGCUGGacaggGCg -3'
miRNA:   3'- cGUGAuUGACGACcACGuCGACCa----CG- -5'
27219 3' -53.4 NC_005832.1 + 17887 0.68 0.829499
Target:  5'- -uGCUGcuGCUGCUGcUGCuGCUGGacaggGCg -3'
miRNA:   3'- cgUGAU--UGACGACcACGuCGACCa----CG- -5'
27219 3' -53.4 NC_005832.1 + 103732 0.68 0.820541
Target:  5'- --------aGCUGGUGgAGCUGaGUGCa -3'
miRNA:   3'- cgugauugaCGACCACgUCGAC-CACG- -5'
27219 3' -53.4 NC_005832.1 + 18084 0.68 0.811391
Target:  5'- uGCACagggcGCUGCUGcUGCuGCUGGacaggGCg -3'
miRNA:   3'- -CGUGau---UGACGACcACGuCGACCa----CG- -5'
27219 3' -53.4 NC_005832.1 + 4275 0.69 0.763128
Target:  5'- uGCACcgUGACUGCcgUGGUGUuuGCugUGGUGUc -3'
miRNA:   3'- -CGUG--AUUGACG--ACCACGu-CG--ACCACG- -5'
27219 3' -53.4 NC_005832.1 + 9313 0.7 0.742841
Target:  5'- -aGCUGAC-GgUGG-GCAGgaGGUGCg -3'
miRNA:   3'- cgUGAUUGaCgACCaCGUCgaCCACG- -5'
27219 3' -53.4 NC_005832.1 + 82383 0.74 0.51947
Target:  5'- ---------nCUGGUGCAGCUGGUGCu -3'
miRNA:   3'- cgugauugacGACCACGUCGACCACG- -5'
27219 3' -53.4 NC_005832.1 + 82338 0.74 0.51947
Target:  5'- ---------nCUGGUGCAGCUGGUGCu -3'
miRNA:   3'- cgugauugacGACCACGUCGACCACG- -5'
27219 3' -53.4 NC_005832.1 + 82458 0.74 0.51947
Target:  5'- ---------nCUGGUGCAGCUGGUGCu -3'
miRNA:   3'- cgugauugacGACCACGUCGACCACG- -5'
27219 3' -53.4 NC_005832.1 + 16653 0.75 0.468877
Target:  5'- aGUACU-ACUcGCUGGUGCAGCccUGGUa- -3'
miRNA:   3'- -CGUGAuUGA-CGACCACGUCG--ACCAcg -5'
27219 3' -53.4 NC_005832.1 + 82277 0.92 0.040359
Target:  5'- gGCACUAACUGCUGGaGCAcuaacuGCUGGUGCu -3'
miRNA:   3'- -CGUGAUUGACGACCaCGU------CGACCACG- -5'
27219 3' -53.4 NC_005832.1 + 82433 0.93 0.035966
Target:  5'- uGCAgCUGG-UGCUGGUGCAGCUGGUGCu -3'
miRNA:   3'- -CGU-GAUUgACGACCACGUCGACCACG- -5'
27219 3' -53.4 NC_005832.1 + 82358 1.14 0.001286
Target:  5'- aGCACUAACUGCUGGUGCAGCUGGUGCu -3'
miRNA:   3'- -CGUGAUUGACGACCACGUCGACCACG- -5'
27219 3' -53.4 NC_005832.1 + 82403 1.14 0.001286
Target:  5'- aGCACUAACUGCUGGUGCAGCUGGUGCu -3'
miRNA:   3'- -CGUGAUUGACGACCACGUCGACCACG- -5'
27219 3' -53.4 NC_005832.1 + 82478 1.14 0.001286
Target:  5'- aGCACUAACUGCUGGUGCAGCUGGUGCu -3'
miRNA:   3'- -CGUGAUUGACGACCACGUCGACCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.