miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2722 3' -45.7 NC_001491.2 + 106325 0.66 0.999989
Target:  5'- -gGAGGUGuCGGcggACCCaGGCACAg-- -3'
miRNA:   3'- gaUUUUAU-GCCaa-UGGG-CCGUGUaug -5'
2722 3' -45.7 NC_001491.2 + 120160 0.66 0.999984
Target:  5'- ---cGAUGgGGUggGgCCGGCGCGUGu -3'
miRNA:   3'- gauuUUAUgCCAa-UgGGCCGUGUAUg -5'
2722 3' -45.7 NC_001491.2 + 28544 0.66 0.999978
Target:  5'- --------aGGUUGCCUGGCuACAgGCa -3'
miRNA:   3'- gauuuuaugCCAAUGGGCCG-UGUaUG- -5'
2722 3' -45.7 NC_001491.2 + 107079 0.66 0.999978
Target:  5'- -aGAAAUGCGGccaccaGCCCccacgGGCACAacuUGCa -3'
miRNA:   3'- gaUUUUAUGCCaa----UGGG-----CCGUGU---AUG- -5'
2722 3' -45.7 NC_001491.2 + 88688 0.66 0.99997
Target:  5'- -gAGAGaACGGUUagACCCGGCcucCGUGg -3'
miRNA:   3'- gaUUUUaUGCCAA--UGGGCCGu--GUAUg -5'
2722 3' -45.7 NC_001491.2 + 96511 0.66 0.999959
Target:  5'- gCUAGAucGCGG--GCauGGCGCGUGCa -3'
miRNA:   3'- -GAUUUuaUGCCaaUGggCCGUGUAUG- -5'
2722 3' -45.7 NC_001491.2 + 57222 0.66 0.999959
Target:  5'- gUAGGAaGCGuaGUUACCCaGCACGUcACa -3'
miRNA:   3'- gAUUUUaUGC--CAAUGGGcCGUGUA-UG- -5'
2722 3' -45.7 NC_001491.2 + 94878 0.67 0.999944
Target:  5'- gCUAAGGUGCGaGUgaagcuucUCCGGCACGa-- -3'
miRNA:   3'- -GAUUUUAUGC-CAau------GGGCCGUGUaug -5'
2722 3' -45.7 NC_001491.2 + 1847 0.67 0.999944
Target:  5'- ------cGCGGguggcGCCUGGCACAggGCu -3'
miRNA:   3'- gauuuuaUGCCaa---UGGGCCGUGUa-UG- -5'
2722 3' -45.7 NC_001491.2 + 123122 0.68 0.999548
Target:  5'- ------cGCGGgcgGCCCGGCGCc--- -3'
miRNA:   3'- gauuuuaUGCCaa-UGGGCCGUGuaug -5'
2722 3' -45.7 NC_001491.2 + 120728 0.7 0.99839
Target:  5'- aCUAGugGGUACcGUgACCCGGCcCAUACc -3'
miRNA:   3'- -GAUU--UUAUGcCAaUGGGCCGuGUAUG- -5'
2722 3' -45.7 NC_001491.2 + 20082 0.7 0.998052
Target:  5'- ------cGCGGgaacGCCCGGCACGgcugggGCg -3'
miRNA:   3'- gauuuuaUGCCaa--UGGGCCGUGUa-----UG- -5'
2722 3' -45.7 NC_001491.2 + 142533 1.11 0.021111
Target:  5'- gCUAAAAUACGGUUACCCGGCACAUACu -3'
miRNA:   3'- -GAUUUUAUGCCAAUGGGCCGUGUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.