miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2722 5' -59.4 NC_001491.2 + 148948 0.66 0.774659
Target:  5'- uGGGccacgccgGGGCuCGGGcCGgGGUGCUCAa -3'
miRNA:   3'- -UCCaua-----CCCG-GCCCaGUgCCAUGGGU- -5'
2722 5' -59.4 NC_001491.2 + 140235 0.66 0.765468
Target:  5'- cGGGgacgGGGgCGGG-CGCGGacgggcuaUACCCGa -3'
miRNA:   3'- -UCCaua-CCCgGCCCaGUGCC--------AUGGGU- -5'
2722 5' -59.4 NC_001491.2 + 147282 0.67 0.688587
Target:  5'- gAGGU--GGGCCGGGgagGCGGccGCCUg -3'
miRNA:   3'- -UCCAuaCCCGGCCCag-UGCCa-UGGGu -5'
2722 5' -59.4 NC_001491.2 + 128316 0.69 0.618793
Target:  5'- cGGGUGUGGGCUGGcGUugucCAUGGUuucAUCUAc -3'
miRNA:   3'- -UCCAUACCCGGCC-CA----GUGCCA---UGGGU- -5'
2722 5' -59.4 NC_001491.2 + 20323 0.69 0.588875
Target:  5'- uGGGUG-GGGCCGGGgCGCGuccGCCUg -3'
miRNA:   3'- -UCCAUaCCCGGCCCaGUGCca-UGGGu -5'
2722 5' -59.4 NC_001491.2 + 121347 0.69 0.578953
Target:  5'- uGGgcUGGGCCgGGGUCGCcggagcuggGGUugCUg -3'
miRNA:   3'- uCCauACCCGG-CCCAGUG---------CCAugGGu -5'
2722 5' -59.4 NC_001491.2 + 146933 0.7 0.530008
Target:  5'- uGGGUAUGcugaacacGGCCuGGGUgACGGUccaggccgagGCCCGg -3'
miRNA:   3'- -UCCAUAC--------CCGG-CCCAgUGCCA----------UGGGU- -5'
2722 5' -59.4 NC_001491.2 + 59931 0.71 0.482658
Target:  5'- cAGGgAUGGGUgGGGUCACacagcuccgggGGUACCa- -3'
miRNA:   3'- -UCCaUACCCGgCCCAGUG-----------CCAUGGgu -5'
2722 5' -59.4 NC_001491.2 + 145657 0.72 0.428695
Target:  5'- uGGGUcUGGGguaUGGGUCugGGguugGCCCGc -3'
miRNA:   3'- -UCCAuACCCg--GCCCAGugCCa---UGGGU- -5'
2722 5' -59.4 NC_001491.2 + 142499 1.08 0.001706
Target:  5'- gAGGUAUGGGCCGGGUCACGGUACCCAc -3'
miRNA:   3'- -UCCAUACCCGGCCCAGUGCCAUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.