miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27220 3' -57 NC_005832.1 + 47729 0.66 0.791512
Target:  5'- aGCUCUgccUGAcGGGcaUGGCGGccgcgaggccGGCCAAGGAg -3'
miRNA:   3'- -UGGGA---ACU-UCC--ACCGCC----------CCGGUUUCU- -5'
27220 3' -57 NC_005832.1 + 4626 0.66 0.791512
Target:  5'- gACCCcagGAuGGgaucGGCgGGGGCCGAcGAc -3'
miRNA:   3'- -UGGGaa-CUuCCa---CCG-CCCCGGUUuCU- -5'
27220 3' -57 NC_005832.1 + 10465 0.66 0.78211
Target:  5'- uCCCUgcugcuGGGguccagGGUGGuGGCCGAGGGc -3'
miRNA:   3'- uGGGAacu---UCCa-----CCGCC-CCGGUUUCU- -5'
27220 3' -57 NC_005832.1 + 56257 0.66 0.772565
Target:  5'- gACCCUUcacGGUGGCGGccggcuGGgCAAGGGu -3'
miRNA:   3'- -UGGGAAcuuCCACCGCC------CCgGUUUCU- -5'
27220 3' -57 NC_005832.1 + 31394 0.66 0.772565
Target:  5'- cGCCuCUcuacacUGAGcGGUGGCGcacuGGGCCAcauAAGAc -3'
miRNA:   3'- -UGG-GA------ACUU-CCACCGC----CCCGGU---UUCU- -5'
27220 3' -57 NC_005832.1 + 19628 0.66 0.75309
Target:  5'- gACCCgUUGAAGGUGggagacgaGCGgcGGGUgGGAGAc -3'
miRNA:   3'- -UGGG-AACUUCCAC--------CGC--CCCGgUUUCU- -5'
27220 3' -57 NC_005832.1 + 54000 0.66 0.752103
Target:  5'- gGCCCUggagcugUGGAGGaGGCuGGGGCUg---- -3'
miRNA:   3'- -UGGGA-------ACUUCCaCCG-CCCCGGuuucu -5'
27220 3' -57 NC_005832.1 + 66381 0.67 0.733166
Target:  5'- -aCCUUGAGGGgaugggGGCuGGcGGCCucccuGGGAu -3'
miRNA:   3'- ugGGAACUUCCa-----CCG-CC-CCGGu----UUCU- -5'
27220 3' -57 NC_005832.1 + 8286 0.67 0.712873
Target:  5'- aGCCCauggUGAAGGUGcCGGaGGCggacggCAGAGAg -3'
miRNA:   3'- -UGGGa---ACUUCCACcGCC-CCG------GUUUCU- -5'
27220 3' -57 NC_005832.1 + 5419 0.67 0.712873
Target:  5'- cACCCU-GGAGGUggacgaGGUGGGGgugcCCGAAGc -3'
miRNA:   3'- -UGGGAaCUUCCA------CCGCCCC----GGUUUCu -5'
27220 3' -57 NC_005832.1 + 31046 0.67 0.702614
Target:  5'- aACCC-UGucGGUGGUGGGGUgGu--- -3'
miRNA:   3'- -UGGGaACuuCCACCGCCCCGgUuucu -5'
27220 3' -57 NC_005832.1 + 6522 0.67 0.692291
Target:  5'- gGCCCU-----GUG-CGGGGCCAGGGAc -3'
miRNA:   3'- -UGGGAacuucCACcGCCCCGGUUUCU- -5'
27220 3' -57 NC_005832.1 + 95321 0.68 0.681916
Target:  5'- cGCCaCggacaaggGAGGGUGGCuGGGGUCAGc-- -3'
miRNA:   3'- -UGG-Gaa------CUUCCACCG-CCCCGGUUucu -5'
27220 3' -57 NC_005832.1 + 80817 0.68 0.681916
Target:  5'- gGCCC-UGGAGG-GGaCGGGGuCCucguAGAc -3'
miRNA:   3'- -UGGGaACUUCCaCC-GCCCC-GGuu--UCU- -5'
27220 3' -57 NC_005832.1 + 36942 0.68 0.671498
Target:  5'- -aCCUUGAAGGaGGCGGcGGU--AGGAg -3'
miRNA:   3'- ugGGAACUUCCaCCGCC-CCGguUUCU- -5'
27220 3' -57 NC_005832.1 + 54061 0.68 0.65057
Target:  5'- cCCCUUGGAGGUGaCGuGGCCccAGGc -3'
miRNA:   3'- uGGGAACUUCCACcGCcCCGGuuUCU- -5'
27220 3' -57 NC_005832.1 + 36164 0.68 0.65057
Target:  5'- uGCCCaUGggGaUGGUugaGGGGUCAGAGu -3'
miRNA:   3'- -UGGGaACuuCcACCG---CCCCGGUUUCu -5'
27220 3' -57 NC_005832.1 + 67027 0.68 0.640078
Target:  5'- gGCCCUggcggcGGccGUGGCGaGGGCCGcGGGc -3'
miRNA:   3'- -UGGGAa-----CUucCACCGC-CCCGGUuUCU- -5'
27220 3' -57 NC_005832.1 + 49511 0.69 0.615936
Target:  5'- gUCCgaGGAGGUcaGGCGGGacauggcggcgcacGCCGAAGAg -3'
miRNA:   3'- uGGGaaCUUCCA--CCGCCC--------------CGGUUUCU- -5'
27220 3' -57 NC_005832.1 + 68034 0.69 0.608597
Target:  5'- gGCCUUUGccuccGAGGUGGaggagaGGGGCgGAGGc -3'
miRNA:   3'- -UGGGAAC-----UUCCACCg-----CCCCGgUUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.