miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27220 3' -57 NC_005832.1 + 54000 0.66 0.752103
Target:  5'- gGCCCUggagcugUGGAGGaGGCuGGGGCUg---- -3'
miRNA:   3'- -UGGGA-------ACUUCCaCCG-CCCCGGuuucu -5'
27220 3' -57 NC_005832.1 + 19628 0.66 0.75309
Target:  5'- gACCCgUUGAAGGUGggagacgaGCGgcGGGUgGGAGAc -3'
miRNA:   3'- -UGGG-AACUUCCAC--------CGC--CCCGgUUUCU- -5'
27220 3' -57 NC_005832.1 + 56257 0.66 0.772565
Target:  5'- gACCCUUcacGGUGGCGGccggcuGGgCAAGGGu -3'
miRNA:   3'- -UGGGAAcuuCCACCGCC------CCgGUUUCU- -5'
27220 3' -57 NC_005832.1 + 31394 0.66 0.772565
Target:  5'- cGCCuCUcuacacUGAGcGGUGGCGcacuGGGCCAcauAAGAc -3'
miRNA:   3'- -UGG-GA------ACUU-CCACCGC----CCCGGU---UUCU- -5'
27220 3' -57 NC_005832.1 + 10465 0.66 0.78211
Target:  5'- uCCCUgcugcuGGGguccagGGUGGuGGCCGAGGGc -3'
miRNA:   3'- uGGGAacu---UCCa-----CCGCC-CCGGUUUCU- -5'
27220 3' -57 NC_005832.1 + 4626 0.66 0.791512
Target:  5'- gACCCcagGAuGGgaucGGCgGGGGCCGAcGAc -3'
miRNA:   3'- -UGGGaa-CUuCCa---CCG-CCCCGGUUuCU- -5'
27220 3' -57 NC_005832.1 + 47729 0.66 0.791512
Target:  5'- aGCUCUgccUGAcGGGcaUGGCGGccgcgaggccGGCCAAGGAg -3'
miRNA:   3'- -UGGGA---ACU-UCC--ACCGCC----------CCGGUUUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.