Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27222 | 3' | -61.8 | NC_005832.1 | + | 942 | 0.73 | 0.237248 |
Target: 5'- uCGGGCUucugcaccUCUCAGCCCCugUGcgCCCGc -3' miRNA: 3'- uGCCCGA--------GGAGUUGGGGugGCa-GGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 2632 | 0.66 | 0.602588 |
Target: 5'- -gGGGCUCC-CAcaaagugagcGCCCCccuucugcACCGaCCCGc -3' miRNA: 3'- ugCCCGAGGaGU----------UGGGG--------UGGCaGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 4782 | 0.68 | 0.464761 |
Target: 5'- uUGGGCacagugcguucucgUCgUCGGcCCCCGCCGaUCCCa -3' miRNA: 3'- uGCCCG--------------AGgAGUU-GGGGUGGC-AGGGc -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 5699 | 0.68 | 0.4675 |
Target: 5'- -aGGGcCUCCacUCGgaggGCCUgugCACCGUCCCGu -3' miRNA: 3'- ugCCC-GAGG--AGU----UGGG---GUGGCAGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 5798 | 0.67 | 0.523875 |
Target: 5'- ---aGCUCCUCAGaaCCACCGacgggUCCCGg -3' miRNA: 3'- ugccCGAGGAGUUggGGUGGC-----AGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 10650 | 0.68 | 0.467499 |
Target: 5'- uCGGGUUCCUggccuccgcagcCGAuCCCCACC-UCCUGu -3' miRNA: 3'- uGCCCGAGGA------------GUU-GGGGUGGcAGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 11827 | 0.74 | 0.200527 |
Target: 5'- cCGGGCUCCUCGugauggCCGCCGUCgCCa -3' miRNA: 3'- uGCCCGAGGAGUugg---GGUGGCAG-GGc -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 18831 | 0.72 | 0.254638 |
Target: 5'- uCGGGCUCCUCAAagacgucuucguCCCCaACCGccagaggaUCCUGa -3' miRNA: 3'- uGCCCGAGGAGUU------------GGGG-UGGC--------AGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 19776 | 0.66 | 0.602588 |
Target: 5'- uGCGGGuCUCC-CAcCCgCCGCuCGUCUCc -3' miRNA: 3'- -UGCCC-GAGGaGUuGG-GGUG-GCAGGGc -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 21098 | 0.67 | 0.533533 |
Target: 5'- -gGGGC-CCguagggacGCCCCgGCCGUCCUGa -3' miRNA: 3'- ugCCCGaGGagu-----UGGGG-UGGCAGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 32314 | 0.7 | 0.373117 |
Target: 5'- gUGGGCUCCg-GACCCCauGCCGuggacUCCCc -3' miRNA: 3'- uGCCCGAGGagUUGGGG--UGGC-----AGGGc -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 39091 | 0.66 | 0.553033 |
Target: 5'- -aGGGCcgUCCggGACCCCAgguucacgguccCCGaUCCCGa -3' miRNA: 3'- ugCCCG--AGGagUUGGGGU------------GGC-AGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 39481 | 0.69 | 0.423006 |
Target: 5'- cUGGGCcCCUgGGCCCUggucGCCGUcgucCCCGg -3' miRNA: 3'- uGCCCGaGGAgUUGGGG----UGGCA----GGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 39662 | 0.7 | 0.356626 |
Target: 5'- cGCGGGUccUCCcggacccuuaagaUCAACCCCucCUGUCCUGc -3' miRNA: 3'- -UGCCCG--AGG-------------AGUUGGGGu-GGCAGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 39986 | 0.68 | 0.473921 |
Target: 5'- uUGGGC-CCUCuGGCCCCAuaccucccacgucuCCGUCCg- -3' miRNA: 3'- uGCCCGaGGAG-UUGGGGU--------------GGCAGGgc -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 41508 | 0.79 | 0.0917 |
Target: 5'- uCGGGCUCCUCGuACCCUGCCcUCUCGa -3' miRNA: 3'- uGCCCGAGGAGU-UGGGGUGGcAGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 41928 | 0.69 | 0.423006 |
Target: 5'- -gGGGCUCgU--ACCUCACgGUCCCa -3' miRNA: 3'- ugCCCGAGgAguUGGGGUGgCAGGGc -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 43045 | 0.67 | 0.523874 |
Target: 5'- uACGGGUUCCUguGuCCCUACgagaCG-CCCGa -3' miRNA: 3'- -UGCCCGAGGAguU-GGGGUG----GCaGGGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 44454 | 0.67 | 0.533533 |
Target: 5'- -gGGGgUCCUCAGCCUCACCuugaCGa -3' miRNA: 3'- ugCCCgAGGAGUUGGGGUGGcaggGC- -5' |
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27222 | 3' | -61.8 | NC_005832.1 | + | 47407 | 0.66 | 0.602587 |
Target: 5'- gACGGGaUCCUUGuugcuGCCCaggAgCGUCCCGg -3' miRNA: 3'- -UGCCCgAGGAGU-----UGGGg--UgGCAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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