miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27222 3' -61.8 NC_005832.1 + 86808 0.96 0.005797
Target:  5'- cACGGGCUCCUCAACCCCA-CGUCCCGu -3'
miRNA:   3'- -UGCCCGAGGAGUUGGGGUgGCAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 47407 0.66 0.602587
Target:  5'- gACGGGaUCCUUGuugcuGCCCaggAgCGUCCCGg -3'
miRNA:   3'- -UGCCCgAGGAGU-----UGGGg--UgGCAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 50637 0.66 0.553033
Target:  5'- gGCGaGGUgCCUCAcCCCCA-CGUCCaCGc -3'
miRNA:   3'- -UGC-CCGaGGAGUuGGGGUgGCAGG-GC- -5'
27222 3' -61.8 NC_005832.1 + 39091 0.66 0.553033
Target:  5'- -aGGGCcgUCCggGACCCCAgguucacgguccCCGaUCCCGa -3'
miRNA:   3'- ugCCCG--AGGagUUGGGGU------------GGC-AGGGC- -5'
27222 3' -61.8 NC_005832.1 + 21098 0.67 0.533533
Target:  5'- -gGGGC-CCguagggacGCCCCgGCCGUCCUGa -3'
miRNA:   3'- ugCCCGaGGagu-----UGGGG-UGGCAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 43045 0.67 0.523874
Target:  5'- uACGGGUUCCUguGuCCCUACgagaCG-CCCGa -3'
miRNA:   3'- -UGCCCGAGGAguU-GGGGUG----GCaGGGC- -5'
27222 3' -61.8 NC_005832.1 + 52781 0.67 0.485962
Target:  5'- ---cGCUCUUUuuACCCUugCGUCCCGg -3'
miRNA:   3'- ugccCGAGGAGu-UGGGGugGCAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 53883 0.68 0.476687
Target:  5'- -gGGGCUCCguucucccaGACCUCACCagaaagggGUCCUGa -3'
miRNA:   3'- ugCCCGAGGag-------UUGGGGUGG--------CAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 10650 0.68 0.467499
Target:  5'- uCGGGUUCCUggccuccgcagcCGAuCCCCACC-UCCUGu -3'
miRNA:   3'- uGCCCGAGGA------------GUU-GGGGUGGcAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 87539 0.69 0.38115
Target:  5'- gACGGGCUCCUgGACUCgGCCaUCacagaCGg -3'
miRNA:   3'- -UGCCCGAGGAgUUGGGgUGGcAGg----GC- -5'
27222 3' -61.8 NC_005832.1 + 41508 0.79 0.0917
Target:  5'- uCGGGCUCCUCGuACCCUGCCcUCUCGa -3'
miRNA:   3'- uGCCCGAGGAGU-UGGGGUGGcAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 97363 0.74 0.185904
Target:  5'- cUGGaGCUCCUCAacgucaaGCCCgACCGUCUCa -3'
miRNA:   3'- uGCC-CGAGGAGU-------UGGGgUGGCAGGGc -5'
27222 3' -61.8 NC_005832.1 + 11827 0.74 0.200527
Target:  5'- cCGGGCUCCUCGugauggCCGCCGUCgCCa -3'
miRNA:   3'- uGCCCGAGGAGUugg---GGUGGCAG-GGc -5'
27222 3' -61.8 NC_005832.1 + 91782 0.73 0.242931
Target:  5'- gACGGGCUUagUCAagaccACCCCGCagagGUCCCGu -3'
miRNA:   3'- -UGCCCGAGg-AGU-----UGGGGUGg---CAGGGC- -5'
27222 3' -61.8 NC_005832.1 + 18831 0.72 0.254638
Target:  5'- uCGGGCUCCUCAAagacgucuucguCCCCaACCGccagaggaUCCUGa -3'
miRNA:   3'- uGCCCGAGGAGUU------------GGGG-UGGC--------AGGGC- -5'
27222 3' -61.8 NC_005832.1 + 91290 0.7 0.349716
Target:  5'- gGCGGGCuUCCUCuGCCUgGCCacGUCCa- -3'
miRNA:   3'- -UGCCCG-AGGAGuUGGGgUGG--CAGGgc -5'
27222 3' -61.8 NC_005832.1 + 90394 0.7 0.352775
Target:  5'- cACGGGggccCUCCUCGacagcuuguccucggGCCUC-CCGUCCCu -3'
miRNA:   3'- -UGCCC----GAGGAGU---------------UGGGGuGGCAGGGc -5'
27222 3' -61.8 NC_005832.1 + 19776 0.66 0.602588
Target:  5'- uGCGGGuCUCC-CAcCCgCCGCuCGUCUCc -3'
miRNA:   3'- -UGCCC-GAGGaGUuGG-GGUG-GCAGGGc -5'
27222 3' -61.8 NC_005832.1 + 79319 0.72 0.248728
Target:  5'- gGCGGccuccaugaGCUCCUCGACuCCCuucCUGUCCCu -3'
miRNA:   3'- -UGCC---------CGAGGAGUUG-GGGu--GGCAGGGc -5'
27222 3' -61.8 NC_005832.1 + 48353 0.72 0.279436
Target:  5'- -gGGGCUCCUCGGuCCCCuuUGUCUgGg -3'
miRNA:   3'- ugCCCGAGGAGUU-GGGGugGCAGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.