miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27223 5' -61.2 NC_005832.1 + 87235 1.09 0.00055
Target:  5'- cACCCUCACCCUGGAGAGCCUGAGGGCc -3'
miRNA:   3'- -UGGGAGUGGGACCUCUCGGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 91654 0.83 0.045071
Target:  5'- uCCCaCACCUUGGAGcagauuGGCCUGAGGGCa -3'
miRNA:   3'- uGGGaGUGGGACCUC------UCGGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 97089 0.8 0.078527
Target:  5'- gGCCCUgucgaccucagaCGCCCUGGAGcaggccgccgcgguGGcCCUGAGGGCa -3'
miRNA:   3'- -UGGGA------------GUGGGACCUC--------------UC-GGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 73014 0.74 0.18765
Target:  5'- gACCCUuugCGCCCgugGGAcccuuugcaccgucuGGGcCCUGAGGGCg -3'
miRNA:   3'- -UGGGA---GUGGGa--CCU---------------CUC-GGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 28186 0.74 0.210249
Target:  5'- cCCCacCACCCUGGAcaGGGCCUGAGccacGGUa -3'
miRNA:   3'- uGGGa-GUGGGACCU--CUCGGACUC----CCG- -5'
27223 5' -61.2 NC_005832.1 + 7251 0.72 0.267501
Target:  5'- gACCaCUUugCCUGGAGGGa--GAGGGUg -3'
miRNA:   3'- -UGG-GAGugGGACCUCUCggaCUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 52575 0.71 0.286977
Target:  5'- aACCCUCACCCUGGGGuccuGCUaUGAcauGGUc -3'
miRNA:   3'- -UGGGAGUGGGACCUCu---CGG-ACUc--CCG- -5'
27223 5' -61.2 NC_005832.1 + 5101 0.71 0.291679
Target:  5'- uCCCUCACCCUguccaagguggccaGGAuGAGCUcGGGaGGCa -3'
miRNA:   3'- uGGGAGUGGGA--------------CCU-CUCGGaCUC-CCG- -5'
27223 5' -61.2 NC_005832.1 + 89687 0.71 0.293712
Target:  5'- gACCCUCACCCUGuuccauguGGCCUGGucGGCg -3'
miRNA:   3'- -UGGGAGUGGGACcuc-----UCGGACUc-CCG- -5'
27223 5' -61.2 NC_005832.1 + 10195 0.71 0.307552
Target:  5'- cGCCuCUC-CCCUGGccuuGAGCCUGucauGGGa -3'
miRNA:   3'- -UGG-GAGuGGGACCu---CUCGGACu---CCCg -5'
27223 5' -61.2 NC_005832.1 + 95345 0.71 0.321884
Target:  5'- cACCUcgguUCGCCuCUGGAGA--CUGAGGGUg -3'
miRNA:   3'- -UGGG----AGUGG-GACCUCUcgGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 53991 0.7 0.352027
Target:  5'- gACCUUCaugGCCCUGGAgcuguggagGAGgCUG-GGGCu -3'
miRNA:   3'- -UGGGAG---UGGGACCU---------CUCgGACuCCCG- -5'
27223 5' -61.2 NC_005832.1 + 55294 0.69 0.384117
Target:  5'- -aCCUCugugGCCCUGG-GAucCCUGAGGGUc -3'
miRNA:   3'- ugGGAG----UGGGACCuCUc-GGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 40430 0.69 0.39833
Target:  5'- cGCCgaCAUCCUGGAGuccaacgacaccagGGCCgacauugcGAGGGCc -3'
miRNA:   3'- -UGGgaGUGGGACCUC--------------UCGGa-------CUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 12575 0.69 0.400873
Target:  5'- gACCCauggGCCUUGauGAGCUUGAGGGCc -3'
miRNA:   3'- -UGGGag--UGGGACcuCUCGGACUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 20478 0.69 0.417216
Target:  5'- aACCCUC-CCgUGGAGuaCCUGAcguucucGGGCa -3'
miRNA:   3'- -UGGGAGuGGgACCUCucGGACU-------CCCG- -5'
27223 5' -61.2 NC_005832.1 + 79547 0.69 0.418088
Target:  5'- cACCCUUACCC----GGGCCUcAGGGCc -3'
miRNA:   3'- -UGGGAGUGGGaccuCUCGGAcUCCCG- -5'
27223 5' -61.2 NC_005832.1 + 52243 0.68 0.42598
Target:  5'- gACCCUCcucCCCUGGAGGcgacgcuGUCUGGGauaguGGCc -3'
miRNA:   3'- -UGGGAGu--GGGACCUCU-------CGGACUC-----CCG- -5'
27223 5' -61.2 NC_005832.1 + 53991 0.68 0.435745
Target:  5'- cCCCUCuCCCUGGcGGuGCCgUGAGcGGg -3'
miRNA:   3'- uGGGAGuGGGACC-UCuCGG-ACUC-CCg -5'
27223 5' -61.2 NC_005832.1 + 46065 0.68 0.44383
Target:  5'- uCCCUguCCUccaGGAGGGCCUGAGccgugaugcuguaGGCu -3'
miRNA:   3'- uGGGAguGGGa--CCUCUCGGACUC-------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.