Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27223 | 5' | -61.2 | NC_005832.1 | + | 10231 | 0.67 | 0.500711 |
Target: 5'- cGCCCUCcaggaCCUGGcuauGGCCUGGGcGGUc -3' miRNA: 3'- -UGGGAGug---GGACCuc--UCGGACUC-CCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 46065 | 0.68 | 0.44383 |
Target: 5'- uCCCUguCCUccaGGAGGGCCUGAGccgugaugcuguaGGCu -3' miRNA: 3'- uGGGAguGGGa--CCUCUCGGACUC-------------CCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 87096 | 0.68 | 0.460248 |
Target: 5'- -aCCUCACUCUccucaGGGGAGugagcguacuguccCCUGAGGGg -3' miRNA: 3'- ugGGAGUGGGA-----CCUCUC--------------GGACUCCCg -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 75920 | 0.68 | 0.463016 |
Target: 5'- gGCCCUgGCCaaGGAGAGgg-GAGaGGCa -3' miRNA: 3'- -UGGGAgUGGgaCCUCUCggaCUC-CCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 46950 | 0.68 | 0.472304 |
Target: 5'- uCUCUgACCCgGGAGuGCCUGGauccacgcGGGUg -3' miRNA: 3'- uGGGAgUGGGaCCUCuCGGACU--------CCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 105110 | 0.67 | 0.481685 |
Target: 5'- -aCCUCACCgUuGAGGGCgUaGAGGGUu -3' miRNA: 3'- ugGGAGUGGgAcCUCUCGgA-CUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 40832 | 0.67 | 0.491155 |
Target: 5'- gACCUgggagcCACCCUGccguaGAG-GCCcGGGGGCa -3' miRNA: 3'- -UGGGa-----GUGGGAC-----CUCuCGGaCUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 67232 | 0.67 | 0.491155 |
Target: 5'- gUCCUCagGCCCUGG-GAGa--GGGGGCu -3' miRNA: 3'- uGGGAG--UGGGACCuCUCggaCUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 53816 | 0.67 | 0.500711 |
Target: 5'- cCCUUCGCCUggGGuuccAGGGuCCUGGGaGGCa -3' miRNA: 3'- uGGGAGUGGGa-CC----UCUC-GGACUC-CCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 52243 | 0.68 | 0.42598 |
Target: 5'- gACCCUCcucCCCUGGAGGcgacgcuGUCUGGGauaguGGCc -3' miRNA: 3'- -UGGGAGu--GGGACCUCU-------CGGACUC-----CCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 79547 | 0.69 | 0.418088 |
Target: 5'- cACCCUUACCC----GGGCCUcAGGGCc -3' miRNA: 3'- -UGGGAGUGGGaccuCUCGGAcUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 20478 | 0.69 | 0.417216 |
Target: 5'- aACCCUC-CCgUGGAGuaCCUGAcguucucGGGCa -3' miRNA: 3'- -UGGGAGuGGgACCUCucGGACU-------CCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 91654 | 0.83 | 0.045071 |
Target: 5'- uCCCaCACCUUGGAGcagauuGGCCUGAGGGCa -3' miRNA: 3'- uGGGaGUGGGACCUC------UCGGACUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 97089 | 0.8 | 0.078527 |
Target: 5'- gGCCCUgucgaccucagaCGCCCUGGAGcaggccgccgcgguGGcCCUGAGGGCa -3' miRNA: 3'- -UGGGA------------GUGGGACCUC--------------UC-GGACUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 7251 | 0.72 | 0.267501 |
Target: 5'- gACCaCUUugCCUGGAGGGa--GAGGGUg -3' miRNA: 3'- -UGG-GAGugGGACCUCUCggaCUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 89687 | 0.71 | 0.293712 |
Target: 5'- gACCCUCACCCUGuuccauguGGCCUGGucGGCg -3' miRNA: 3'- -UGGGAGUGGGACcuc-----UCGGACUc-CCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 10195 | 0.71 | 0.307552 |
Target: 5'- cGCCuCUC-CCCUGGccuuGAGCCUGucauGGGa -3' miRNA: 3'- -UGG-GAGuGGGACCu---CUCGGACu---CCCg -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 95345 | 0.71 | 0.321884 |
Target: 5'- cACCUcgguUCGCCuCUGGAGA--CUGAGGGUg -3' miRNA: 3'- -UGGG----AGUGG-GACCUCUcgGACUCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 53991 | 0.7 | 0.352027 |
Target: 5'- gACCUUCaugGCCCUGGAgcuguggagGAGgCUG-GGGCu -3' miRNA: 3'- -UGGGAG---UGGGACCU---------CUCgGACuCCCG- -5' |
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27223 | 5' | -61.2 | NC_005832.1 | + | 12575 | 0.69 | 0.400873 |
Target: 5'- gACCCauggGCCUUGauGAGCUUGAGGGCc -3' miRNA: 3'- -UGGGag--UGGGACcuCUCGGACUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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