miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27224 5' -58.6 NC_005832.1 + 1532 0.67 0.643111
Target:  5'- aGCCUCacuGCCGAuGGCcugagCCUGGAGu -3'
miRNA:   3'- aCGGAGgccUGGUUuCCGa----GGACCUC- -5'
27224 5' -58.6 NC_005832.1 + 2897 0.73 0.319058
Target:  5'- aGCCUUugUGGACCGGAGGUggCUGGAc -3'
miRNA:   3'- aCGGAG--GCCUGGUUUCCGagGACCUc -5'
27224 5' -58.6 NC_005832.1 + 3021 0.67 0.663805
Target:  5'- -aCCUCCGGuCCAcaAAGGC-UgUGGGGg -3'
miRNA:   3'- acGGAGGCCuGGU--UUCCGaGgACCUC- -5'
27224 5' -58.6 NC_005832.1 + 9026 0.69 0.540361
Target:  5'- gGCCUCCuugcuggucaGG-UCAGAGGaCUCgUGGAGg -3'
miRNA:   3'- aCGGAGG----------CCuGGUUUCC-GAGgACCUC- -5'
27224 5' -58.6 NC_005832.1 + 10231 0.67 0.62238
Target:  5'- cGcCCUCCaGGACCu--GGCUauggCCUGGGc -3'
miRNA:   3'- aC-GGAGG-CCUGGuuuCCGA----GGACCUc -5'
27224 5' -58.6 NC_005832.1 + 11539 0.75 0.222058
Target:  5'- aGCUUCUGGugGCCAAAGGCggggucgUCCUGGAc -3'
miRNA:   3'- aCGGAGGCC--UGGUUUCCG-------AGGACCUc -5'
27224 5' -58.6 NC_005832.1 + 12673 0.71 0.416606
Target:  5'- cUGCuCUCCGuuaaGGCCGAGGGCcUCCUuGGAc -3'
miRNA:   3'- -ACG-GAGGC----CUGGUUUCCG-AGGA-CCUc -5'
27224 5' -58.6 NC_005832.1 + 15178 0.68 0.550459
Target:  5'- cGCCUgCCuGGCCGGAGGagacaacgCCUGGAu -3'
miRNA:   3'- aCGGA-GGcCUGGUUUCCga------GGACCUc -5'
27224 5' -58.6 NC_005832.1 + 20688 0.67 0.663805
Target:  5'- cUGCCuUCCGGAUCGggagcagaguacGAGGCcgcCCUGGc- -3'
miRNA:   3'- -ACGG-AGGCCUGGU------------UUCCGa--GGACCuc -5'
27224 5' -58.6 NC_005832.1 + 21149 0.69 0.494806
Target:  5'- gGCCUUgGGAaacaGGAGGCcggcgggagcugggaUCCUGGAGg -3'
miRNA:   3'- aCGGAGgCCUgg--UUUCCG---------------AGGACCUC- -5'
27224 5' -58.6 NC_005832.1 + 27120 0.67 0.653467
Target:  5'- gGCCUCCGGG--AAAGG-UCgaGGAGg -3'
miRNA:   3'- aCGGAGGCCUggUUUCCgAGgaCCUC- -5'
27224 5' -58.6 NC_005832.1 + 32393 0.7 0.44369
Target:  5'- cUGgCUCCGGGgccCUAAAGGCcuccuugugCCUGGAGu -3'
miRNA:   3'- -ACgGAGGCCU---GGUUUCCGa--------GGACCUC- -5'
27224 5' -58.6 NC_005832.1 + 35146 0.68 0.560615
Target:  5'- cUGCCUUCGGA-CAGGGGCccUCCgacgUGGAa -3'
miRNA:   3'- -ACGGAGGCCUgGUUUCCG--AGG----ACCUc -5'
27224 5' -58.6 NC_005832.1 + 36558 0.69 0.500654
Target:  5'- gGCCgCCaGGGUCGGAGuGUUCCUGGGGg -3'
miRNA:   3'- aCGGaGG-CCUGGUUUC-CGAGGACCUC- -5'
27224 5' -58.6 NC_005832.1 + 41092 0.67 0.643111
Target:  5'- cGCUUCUGGccuuAUCAGGGGCagCgCUGGAGc -3'
miRNA:   3'- aCGGAGGCC----UGGUUUCCGa-G-GACCUC- -5'
27224 5' -58.6 NC_005832.1 + 42520 0.73 0.324251
Target:  5'- gGCCUCUguGGAagaggaccgcaacuCCAAGGGCUCCaaGGAGg -3'
miRNA:   3'- aCGGAGG--CCU--------------GGUUUCCGAGGa-CCUC- -5'
27224 5' -58.6 NC_005832.1 + 43794 0.68 0.559597
Target:  5'- cUGCUUCCccauguuGGACUGGuAGGCguUCCUGGGGc -3'
miRNA:   3'- -ACGGAGG-------CCUGGUU-UCCG--AGGACCUC- -5'
27224 5' -58.6 NC_005832.1 + 43901 0.69 0.538349
Target:  5'- aGCCUCuuuaCGGACCuagaguccaccAGGCUCUuuUGGGGg -3'
miRNA:   3'- aCGGAG----GCCUGGuu---------UCCGAGG--ACCUC- -5'
27224 5' -58.6 NC_005832.1 + 45661 0.67 0.663805
Target:  5'- aGCCUCuCGGAC---AGGC-CCUGGc- -3'
miRNA:   3'- aCGGAG-GCCUGguuUCCGaGGACCuc -5'
27224 5' -58.6 NC_005832.1 + 52369 0.66 0.713914
Target:  5'- cGCCUCCaGGGgaGGAgggucguGGCUCCUGGc- -3'
miRNA:   3'- aCGGAGG-CCUggUUU-------CCGAGGACCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.