miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27224 5' -58.6 NC_005832.1 + 1532 0.67 0.643111
Target:  5'- aGCCUCacuGCCGAuGGCcugagCCUGGAGu -3'
miRNA:   3'- aCGGAGgccUGGUUuCCGa----GGACCUC- -5'
27224 5' -58.6 NC_005832.1 + 95719 0.7 0.481284
Target:  5'- gGuCCUgCCGGuCCuAGGGUUCCUGGuGg -3'
miRNA:   3'- aC-GGA-GGCCuGGuUUCCGAGGACCuC- -5'
27224 5' -58.6 NC_005832.1 + 87251 0.69 0.510467
Target:  5'- aGCCUgaGGGCCAuggucAAGGCgUCUGGAa -3'
miRNA:   3'- aCGGAggCCUGGU-----UUCCGaGGACCUc -5'
27224 5' -58.6 NC_005832.1 + 88141 0.69 0.530326
Target:  5'- -aUCUCCgagaGGACCcuggccAGGCUCCUGGAc -3'
miRNA:   3'- acGGAGG----CCUGGuu----UCCGAGGACCUc -5'
27224 5' -58.6 NC_005832.1 + 9026 0.69 0.540361
Target:  5'- gGCCUCCuugcuggucaGG-UCAGAGGaCUCgUGGAGg -3'
miRNA:   3'- aCGGAGG----------CCuGGUUUCC-GAGgACCUC- -5'
27224 5' -58.6 NC_005832.1 + 93591 0.68 0.550459
Target:  5'- cGCCUCCcgugcuagcgGGAgCGAucaugcucaGGGCUCCggcgUGGAGg -3'
miRNA:   3'- aCGGAGG----------CCUgGUU---------UCCGAGG----ACCUC- -5'
27224 5' -58.6 NC_005832.1 + 35146 0.68 0.560615
Target:  5'- cUGCCUUCGGA-CAGGGGCccUCCgacgUGGAa -3'
miRNA:   3'- -ACGGAGGCCUgGUUUCCG--AGG----ACCUc -5'
27224 5' -58.6 NC_005832.1 + 87510 0.68 0.590331
Target:  5'- cGuCCUCCaGGcuggcggccauguACCAcgacGGGCUCCUGGAc -3'
miRNA:   3'- aC-GGAGG-CC-------------UGGUu---UCCGAGGACCUc -5'
27224 5' -58.6 NC_005832.1 + 10231 0.67 0.62238
Target:  5'- cGcCCUCCaGGACCu--GGCUauggCCUGGGc -3'
miRNA:   3'- aC-GGAGG-CCUGGuuuCCGA----GGACCUc -5'
27224 5' -58.6 NC_005832.1 + 95509 0.7 0.481284
Target:  5'- gGuCCUgCCGGuCCuAGGGUUCCUGGuGg -3'
miRNA:   3'- aC-GGA-GGCCuGGuUUCCGAGGACCuC- -5'
27224 5' -58.6 NC_005832.1 + 95355 0.7 0.452937
Target:  5'- cGCCUCUGGAgaCUGAGGGUgUCCcGGGGa -3'
miRNA:   3'- aCGGAGGCCU--GGUUUCCG-AGGaCCUC- -5'
27224 5' -58.6 NC_005832.1 + 12673 0.71 0.416606
Target:  5'- cUGCuCUCCGuuaaGGCCGAGGGCcUCCUuGGAc -3'
miRNA:   3'- -ACG-GAGGC----CUGGUUUCCG-AGGA-CCUc -5'
27224 5' -58.6 NC_005832.1 + 96794 0.76 0.206578
Target:  5'- gGCCUCaagcagacauguCGGGCUucaAGAGGCUCCUGGGa -3'
miRNA:   3'- aCGGAG------------GCCUGG---UUUCCGAGGACCUc -5'
27224 5' -58.6 NC_005832.1 + 11539 0.75 0.222058
Target:  5'- aGCUUCUGGugGCCAAAGGCggggucgUCCUGGAc -3'
miRNA:   3'- aCGGAGGCC--UGGUUUCCG-------AGGACCUc -5'
27224 5' -58.6 NC_005832.1 + 62017 0.75 0.239687
Target:  5'- aGCCUCCGGGCUGGAGGg-UgUGGGGg -3'
miRNA:   3'- aCGGAGGCCUGGUUUCCgaGgACCUC- -5'
27224 5' -58.6 NC_005832.1 + 67068 0.73 0.297513
Target:  5'- gGCCUgacCUGGACgCcGAGGC-CCUGGAGg -3'
miRNA:   3'- aCGGA---GGCCUG-GuUUCCGaGGACCUC- -5'
27224 5' -58.6 NC_005832.1 + 67606 0.73 0.311749
Target:  5'- uUGCCUCgGGGacuggaCAGAGGC-CCUGGGu -3'
miRNA:   3'- -ACGGAGgCCUg-----GUUUCCGaGGACCUc -5'
27224 5' -58.6 NC_005832.1 + 2897 0.73 0.319058
Target:  5'- aGCCUUugUGGACCGGAGGUggCUGGAc -3'
miRNA:   3'- aCGGAG--GCCUGGUUUCCGagGACCUc -5'
27224 5' -58.6 NC_005832.1 + 42520 0.73 0.324251
Target:  5'- gGCCUCUguGGAagaggaccgcaacuCCAAGGGCUCCaaGGAGg -3'
miRNA:   3'- aCGGAGG--CCU--------------GGUUUCCGAGGa-CCUC- -5'
27224 5' -58.6 NC_005832.1 + 97171 0.71 0.415721
Target:  5'- aGCCUggacuccCUGGACguCAAgaagcucgacAGGCUCCUGGAGc -3'
miRNA:   3'- aCGGA-------GGCCUG--GUU----------UCCGAGGACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.