miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27229 3' -54.3 NC_005832.1 + 91159 1.11 0.001561
Target:  5'- gAAGUCUGCUGCCACAGGCAAAAGCCCa -3'
miRNA:   3'- -UUCAGACGACGGUGUCCGUUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 55733 0.76 0.331025
Target:  5'- cAGUUUGCUGCUGCuGGGUccacuuuuucgGAGAGCCCg -3'
miRNA:   3'- uUCAGACGACGGUG-UCCG-----------UUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 86344 0.73 0.485251
Target:  5'- gGAGUCUGUUgaGCCcgaGCAGcaGCAGGAGCCUg -3'
miRNA:   3'- -UUCAGACGA--CGG---UGUC--CGUUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 21049 0.72 0.526367
Target:  5'- aGAGUCUGCUGUCAuCAGGaCAagcagggggagGAGGCUg -3'
miRNA:   3'- -UUCAGACGACGGU-GUCC-GU-----------UUUCGGg -5'
27229 3' -54.3 NC_005832.1 + 72843 0.71 0.579455
Target:  5'- aGGGUCUGggGCCugAGcGCccucAGGGCCCa -3'
miRNA:   3'- -UUCAGACgaCGGugUC-CGu---UUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 48489 0.71 0.60104
Target:  5'- -cGUCUGCaugaggGUgACGGGCuucAGGCCCg -3'
miRNA:   3'- uuCAGACGa-----CGgUGUCCGuu-UUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 7686 0.7 0.644448
Target:  5'- uGGGUCUGacgGCCAgCAGGUccaGGAGGUCCc -3'
miRNA:   3'- -UUCAGACga-CGGU-GUCCG---UUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 71158 0.7 0.666124
Target:  5'- cAGUUUGCcggagagGCCGuCAGGCcguccGAGCCCg -3'
miRNA:   3'- uUCAGACGa------CGGU-GUCCGuu---UUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 87432 0.7 0.666124
Target:  5'- --aUCUGCUgGCCAUGgacccggcGGCAAAGGCCg -3'
miRNA:   3'- uucAGACGA-CGGUGU--------CCGUUUUCGGg -5'
27229 3' -54.3 NC_005832.1 + 26465 0.7 0.666124
Target:  5'- -cGUCcccgGCgagGCCAcCGGGCAGAGGUUCg -3'
miRNA:   3'- uuCAGa---CGa--CGGU-GUCCGUUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 67038 0.69 0.698379
Target:  5'- cGGcCgugGCgaggGCCGCGGGCGuaaaGAGGCCUg -3'
miRNA:   3'- uUCaGa--CGa---CGGUGUCCGU----UUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 46808 0.69 0.698379
Target:  5'- -cGUgUGC-GCCuGCAGGCGccuggcauuccuGGAGCCCg -3'
miRNA:   3'- uuCAgACGaCGG-UGUCCGU------------UUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 78804 0.69 0.698379
Target:  5'- cGGUCUGCgccgGCCACucugGGGCG--GGCUUg -3'
miRNA:   3'- uUCAGACGa---CGGUG----UCCGUuuUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 93747 0.69 0.709019
Target:  5'- cGGUCUGaCUcCCAguCAGGUGAGGGUCCa -3'
miRNA:   3'- uUCAGAC-GAcGGU--GUCCGUUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 11945 0.69 0.709019
Target:  5'- --uUCUGCguuUGCCGCcGGCAccguGCCCg -3'
miRNA:   3'- uucAGACG---ACGGUGuCCGUuuu-CGGG- -5'
27229 3' -54.3 NC_005832.1 + 3072 0.69 0.719587
Target:  5'- -uGUCU-CUGCCccACGGGauGAAGCCCa -3'
miRNA:   3'- uuCAGAcGACGG--UGUCCguUUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 42860 0.69 0.729025
Target:  5'- --aUgUGCUucGCCACAGGCAacuggacagucaaGAGGCUCg -3'
miRNA:   3'- uucAgACGA--CGGUGUCCGU-------------UUUCGGG- -5'
27229 3' -54.3 NC_005832.1 + 33604 0.69 0.73007
Target:  5'- cGAGUCcccugaggGUcGCCGCGGGCAAgauAGGCuCCa -3'
miRNA:   3'- -UUCAGa-------CGaCGGUGUCCGUU---UUCG-GG- -5'
27229 3' -54.3 NC_005832.1 + 37190 0.69 0.73007
Target:  5'- aGAGUCUGCcguucuugGCCaggcACAGGaAAGAGCCg -3'
miRNA:   3'- -UUCAGACGa-------CGG----UGUCCgUUUUCGGg -5'
27229 3' -54.3 NC_005832.1 + 12579 0.68 0.740457
Target:  5'- aAAGaCUaCgagGCCAUGGuGCAGAAGCCCg -3'
miRNA:   3'- -UUCaGAcGa--CGGUGUC-CGUUUUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.