Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27229 | 3' | -54.3 | NC_005832.1 | + | 98168 | 0.66 | 0.845321 |
Target: 5'- ---cCUGUgGCCccaggACAGGCucAGGCCCa -3' miRNA: 3'- uucaGACGaCGG-----UGUCCGuuUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 75792 | 0.67 | 0.800162 |
Target: 5'- uGGUCUGggcGCCAUGGGCu-GGGCCa -3' miRNA: 3'- uUCAGACga-CGGUGUCCGuuUUCGGg -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 1501 | 0.67 | 0.800162 |
Target: 5'- aGAG-UUGCagUGCCugGGGuCGGGAGCCg -3' miRNA: 3'- -UUCaGACG--ACGGugUCC-GUUUUCGGg -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 91195 | 0.67 | 0.818808 |
Target: 5'- cAAGUCUGcCUGUCGucGGC-GAGGUCCg -3' miRNA: 3'- -UUCAGAC-GACGGUguCCGuUUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 81952 | 0.67 | 0.827849 |
Target: 5'- -uGUUccugUGCUGCCAaaucguGGUuGAGGCCCu -3' miRNA: 3'- uuCAG----ACGACGGUgu----CCGuUUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 77484 | 0.67 | 0.827849 |
Target: 5'- ---aCUGCaGCCGCGGcccCAAAAGUCCa -3' miRNA: 3'- uucaGACGaCGGUGUCc--GUUUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 788 | 0.66 | 0.844468 |
Target: 5'- uGGGUCUuuuuuauGCggGCgCACAGgggcugagagguGCAGAAGCCCg -3' miRNA: 3'- -UUCAGA-------CGa-CG-GUGUC------------CGUUUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 13319 | 0.66 | 0.845321 |
Target: 5'- uGGUCUuGCcgGCCAUcuGGGaCAGGGGCaCCg -3' miRNA: 3'- uUCAGA-CGa-CGGUG--UCC-GUUUUCG-GG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 26308 | 0.66 | 0.845321 |
Target: 5'- gGGGaCUGCUGUCGCAGuucCGAAccucuGCCCg -3' miRNA: 3'- -UUCaGACGACGGUGUCc--GUUUu----CGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 18088 | 0.68 | 0.780832 |
Target: 5'- cAGGgcgCUGCUGCUGCugcuggacaGGGCGucucuGAGUCCa -3' miRNA: 3'- -UUCa--GACGACGGUG---------UCCGUu----UUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 66655 | 0.68 | 0.744583 |
Target: 5'- -cGUCcgUGCUGUguCAGGUcucucaggcucugcuGGAAGCCCa -3' miRNA: 3'- uuCAG--ACGACGguGUCCG---------------UUUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 42860 | 0.69 | 0.729025 |
Target: 5'- --aUgUGCUucGCCACAGGCAacuggacagucaaGAGGCUCg -3' miRNA: 3'- uucAgACGA--CGGUGUCCGU-------------UUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 55733 | 0.76 | 0.331025 |
Target: 5'- cAGUUUGCUGCUGCuGGGUccacuuuuucgGAGAGCCCg -3' miRNA: 3'- uUCAGACGACGGUG-UCCG-----------UUUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 21049 | 0.72 | 0.526367 |
Target: 5'- aGAGUCUGCUGUCAuCAGGaCAagcagggggagGAGGCUg -3' miRNA: 3'- -UUCAGACGACGGU-GUCC-GU-----------UUUCGGg -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 72843 | 0.71 | 0.579455 |
Target: 5'- aGGGUCUGggGCCugAGcGCccucAGGGCCCa -3' miRNA: 3'- -UUCAGACgaCGGugUC-CGu---UUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 71158 | 0.7 | 0.666124 |
Target: 5'- cAGUUUGCcggagagGCCGuCAGGCcguccGAGCCCg -3' miRNA: 3'- uUCAGACGa------CGGU-GUCCGuu---UUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 87432 | 0.7 | 0.666124 |
Target: 5'- --aUCUGCUgGCCAUGgacccggcGGCAAAGGCCg -3' miRNA: 3'- uucAGACGA-CGGUGU--------CCGUUUUCGGg -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 67038 | 0.69 | 0.698379 |
Target: 5'- cGGcCgugGCgaggGCCGCGGGCGuaaaGAGGCCUg -3' miRNA: 3'- uUCaGa--CGa---CGGUGUCCGU----UUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 93747 | 0.69 | 0.709019 |
Target: 5'- cGGUCUGaCUcCCAguCAGGUGAGGGUCCa -3' miRNA: 3'- uUCAGAC-GAcGGU--GUCCGUUUUCGGG- -5' |
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27229 | 3' | -54.3 | NC_005832.1 | + | 11945 | 0.69 | 0.709019 |
Target: 5'- --uUCUGCguuUGCCGCcGGCAccguGCCCg -3' miRNA: 3'- uucAGACG---ACGGUGuCCGUuuu-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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