Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 94226 | 1.1 | 0.002121 |
Target: 5'- aACAAAGGUCCUCACGCAGUCCACCACg -3' miRNA: 3'- -UGUUUCCAGGAGUGCGUCAGGUGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 90280 | 0.78 | 0.297492 |
Target: 5'- uGCGAGccUCCUCGCGUGGUCCugCACg -3' miRNA: 3'- -UGUUUccAGGAGUGCGUCAGGugGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 98044 | 0.77 | 0.335226 |
Target: 5'- cCGAAGGUCCUCAgGC-GUCgGCCAg -3' miRNA: 3'- uGUUUCCAGGAGUgCGuCAGgUGGUg -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 6008 | 0.74 | 0.448825 |
Target: 5'- cCAGGGGUCCUCACGCAgaaguGUCC-CUgguGCa -3' miRNA: 3'- uGUUUCCAGGAGUGCGU-----CAGGuGG---UG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 26445 | 0.73 | 0.528381 |
Target: 5'- gGCAGAGGUUCggaacugCGacaGCAGUCC-CCACu -3' miRNA: 3'- -UGUUUCCAGGa------GUg--CGUCAGGuGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 9156 | 0.73 | 0.538716 |
Target: 5'- uGCAccAGGGUCCUCugauCcCAGUCCACgCACc -3' miRNA: 3'- -UGU--UUCCAGGAGu---GcGUCAGGUG-GUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 675 | 0.72 | 0.580671 |
Target: 5'- aGCAGGGuGUCCUCggACGCGGaccCCGCCGg -3' miRNA: 3'- -UGUUUC-CAGGAG--UGCGUCa--GGUGGUg -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 74397 | 0.71 | 0.612584 |
Target: 5'- -aAAAGGUCCUCAgGguGggucUCCAgCACa -3' miRNA: 3'- ugUUUCCAGGAGUgCguC----AGGUgGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 104267 | 0.71 | 0.633952 |
Target: 5'- -gAAAGGUCCUgACGguGUaCCugCAg -3' miRNA: 3'- ugUUUCCAGGAgUGCguCA-GGugGUg -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 92592 | 0.71 | 0.654247 |
Target: 5'- gACu--GGUCCUCGucguccuCGUcGUCCACCACc -3' miRNA: 3'- -UGuuuCCAGGAGU-------GCGuCAGGUGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 42349 | 0.7 | 0.687181 |
Target: 5'- --cGAGGUCUcgugCAgGaCGGUCCACCACc -3' miRNA: 3'- uguUUCCAGGa---GUgC-GUCAGGUGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 52550 | 0.7 | 0.687181 |
Target: 5'- uGCcGGGGaUCCUggcCAUGCccaAGUCCACCACc -3' miRNA: 3'- -UGuUUCC-AGGA---GUGCG---UCAGGUGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 14356 | 0.7 | 0.687181 |
Target: 5'- aGCGAAGG-CCUacgcgacauuguUGCGCAGUCCAC-ACg -3' miRNA: 3'- -UGUUUCCaGGA------------GUGCGUCAGGUGgUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 91893 | 0.7 | 0.687181 |
Target: 5'- gGCAcGGGaUCCUUGCaGUccuuGUCCACCACg -3' miRNA: 3'- -UGUuUCC-AGGAGUG-CGu---CAGGUGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 71408 | 0.7 | 0.695614 |
Target: 5'- uGCuuGGGUCCaccgacauuggcCACGCAGacaCCGCCGCg -3' miRNA: 3'- -UGuuUCCAGGa-----------GUGCGUCa--GGUGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 36385 | 0.7 | 0.707148 |
Target: 5'- cGCGAGGGUCCUCuccaaguACGgccucaaGGUCCGCgACc -3' miRNA: 3'- -UGUUUCCAGGAG-------UGCg------UCAGGUGgUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 103472 | 0.7 | 0.708193 |
Target: 5'- gGCGGAGGUCCU--CGgGGUCCaggACUACg -3' miRNA: 3'- -UGUUUCCAGGAguGCgUCAGG---UGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 94901 | 0.69 | 0.718599 |
Target: 5'- cGCGucGGcCCUCGCGCAGaUCCuCCu- -3' miRNA: 3'- -UGUuuCCaGGAGUGCGUC-AGGuGGug -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 10183 | 0.69 | 0.728924 |
Target: 5'- -gAGAGGaUCCUCAUGacuUCCGCCGCc -3' miRNA: 3'- ugUUUCC-AGGAGUGCgucAGGUGGUG- -5' |
|||||||
27231 | 5' | -54.3 | NC_005832.1 | + | 44184 | 0.69 | 0.74929 |
Target: 5'- gACGAGGGcCCcCGCGCacaacgGGUCUAUCACc -3' miRNA: 3'- -UGUUUCCaGGaGUGCG------UCAGGUGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home