miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27231 5' -54.3 NC_005832.1 + 675 0.72 0.580671
Target:  5'- aGCAGGGuGUCCUCggACGCGGaccCCGCCGg -3'
miRNA:   3'- -UGUUUC-CAGGAG--UGCGUCa--GGUGGUg -5'
27231 5' -54.3 NC_005832.1 + 746 0.66 0.899103
Target:  5'- -aGAGGGUCCUUACcCuuggaagaguaccugAGUCCGCaCACu -3'
miRNA:   3'- ugUUUCCAGGAGUGcG---------------UCAGGUG-GUG- -5'
27231 5' -54.3 NC_005832.1 + 2800 0.68 0.798058
Target:  5'- gAC-AGGGUCCUCGCcaUAGUCCACa-- -3'
miRNA:   3'- -UGuUUCCAGGAGUGc-GUCAGGUGgug -5'
27231 5' -54.3 NC_005832.1 + 5345 0.67 0.859226
Target:  5'- -gGAGGGcUCCUCAgGCAGaaCAUCAUg -3'
miRNA:   3'- ugUUUCC-AGGAGUgCGUCagGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 6008 0.74 0.448825
Target:  5'- cCAGGGGUCCUCACGCAgaaguGUCC-CUgguGCa -3'
miRNA:   3'- uGUUUCCAGGAGUGCGU-----CAGGuGG---UG- -5'
27231 5' -54.3 NC_005832.1 + 7368 0.67 0.834194
Target:  5'- gGCAAAguGGUCCUCGCaCGGguguUCCuCCGCu -3'
miRNA:   3'- -UGUUU--CCAGGAGUGcGUC----AGGuGGUG- -5'
27231 5' -54.3 NC_005832.1 + 9156 0.73 0.538716
Target:  5'- uGCAccAGGGUCCUCugauCcCAGUCCACgCACc -3'
miRNA:   3'- -UGU--UUCCAGGAGu---GcGUCAGGUG-GUG- -5'
27231 5' -54.3 NC_005832.1 + 10183 0.69 0.728924
Target:  5'- -gAGAGGaUCCUCAUGacuUCCGCCGCc -3'
miRNA:   3'- ugUUUCC-AGGAGUGCgucAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 14356 0.7 0.687181
Target:  5'- aGCGAAGG-CCUacgcgacauuguUGCGCAGUCCAC-ACg -3'
miRNA:   3'- -UGUUUCCaGGA------------GUGCGUCAGGUGgUG- -5'
27231 5' -54.3 NC_005832.1 + 26445 0.73 0.528381
Target:  5'- gGCAGAGGUUCggaacugCGacaGCAGUCC-CCACu -3'
miRNA:   3'- -UGUUUCCAGGa------GUg--CGUCAGGuGGUG- -5'
27231 5' -54.3 NC_005832.1 + 27992 0.69 0.769207
Target:  5'- uCGGAGG-CUUCACGguGUCCGgaGCa -3'
miRNA:   3'- uGUUUCCaGGAGUGCguCAGGUggUG- -5'
27231 5' -54.3 NC_005832.1 + 36385 0.7 0.707148
Target:  5'- cGCGAGGGUCCUCuccaaguACGgccucaaGGUCCGCgACc -3'
miRNA:   3'- -UGUUUCCAGGAG-------UGCg------UCAGGUGgUG- -5'
27231 5' -54.3 NC_005832.1 + 42349 0.7 0.687181
Target:  5'- --cGAGGUCUcgugCAgGaCGGUCCACCACc -3'
miRNA:   3'- uguUUCCAGGa---GUgC-GUCAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 44184 0.69 0.74929
Target:  5'- gACGAGGGcCCcCGCGCacaacgGGUCUAUCACc -3'
miRNA:   3'- -UGUUUCCaGGaGUGCG------UCAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 52056 0.68 0.816491
Target:  5'- uGCGAuGGcCCUCAgccucUGCAcugcGUCCACCAUg -3'
miRNA:   3'- -UGUUuCCaGGAGU-----GCGU----CAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 52463 0.66 0.889443
Target:  5'- -uGAGGGUUCUCACGU---CgGCCGCa -3'
miRNA:   3'- ugUUUCCAGGAGUGCGucaGgUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 52550 0.7 0.687181
Target:  5'- uGCcGGGGaUCCUggcCAUGCccaAGUCCACCACc -3'
miRNA:   3'- -UGuUUCC-AGGA---GUGCG---UCAGGUGGUG- -5'
27231 5' -54.3 NC_005832.1 + 54737 0.66 0.9057
Target:  5'- cUAGAGGacagcgucucggcuaUCCUCuugACGUGGUCCACCc- -3'
miRNA:   3'- uGUUUCC---------------AGGAG---UGCGUCAGGUGGug -5'
27231 5' -54.3 NC_005832.1 + 54863 0.67 0.841903
Target:  5'- cACAGGccGGUCCUCuCGCAggcgucgaaccccGUCC-CCACc -3'
miRNA:   3'- -UGUUU--CCAGGAGuGCGU-------------CAGGuGGUG- -5'
27231 5' -54.3 NC_005832.1 + 61500 0.69 0.769207
Target:  5'- aGC-AGGGUCCUCACaGCAcUCCGCa-- -3'
miRNA:   3'- -UGuUUCCAGGAGUG-CGUcAGGUGgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.