miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27236 3' -56.2 NC_005832.1 + 46198 0.75 0.339121
Target:  5'- --cGGCUCAGGCCCuCC-UGGAGGAc -3'
miRNA:   3'- uguCCGAGUCCGGGuGGcACCUUUUc -5'
27236 3' -56.2 NC_005832.1 + 50979 0.69 0.645741
Target:  5'- uCGGGCUaaCAGGUCCGCgCGgaaaaaaGGGAGAGa -3'
miRNA:   3'- uGUCCGA--GUCCGGGUG-GCa------CCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 53985 0.67 0.758023
Target:  5'- --cGGCaagaccuUCAuGGCCCuggaGCUGUGGAGGAGg -3'
miRNA:   3'- uguCCG-------AGU-CCGGG----UGGCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 55832 0.67 0.739096
Target:  5'- aGCcGG-UCAGGgCCGCCGUGGugguGGGg -3'
miRNA:   3'- -UGuCCgAGUCCgGGUGGCACCuu--UUC- -5'
27236 3' -56.2 NC_005832.1 + 65581 0.7 0.582536
Target:  5'- gGCAGGaC-CcuGCCCGCCG-GGggGAGa -3'
miRNA:   3'- -UGUCC-GaGucCGGGUGGCaCCuuUUC- -5'
27236 3' -56.2 NC_005832.1 + 66682 0.68 0.718788
Target:  5'- gACAGGaUCAcGG-CCGCCGUGGAc--- -3'
miRNA:   3'- -UGUCCgAGU-CCgGGUGGCACCUuuuc -5'
27236 3' -56.2 NC_005832.1 + 67539 0.66 0.824416
Target:  5'- gACcGGUUUGGGCCCuGCCGUuuGGGAccAGGa -3'
miRNA:   3'- -UGuCCGAGUCCGGG-UGGCA--CCUU--UUC- -5'
27236 3' -56.2 NC_005832.1 + 72772 0.7 0.603537
Target:  5'- uCGGGCcccgCGGGCCCAUCG-GGAc--- -3'
miRNA:   3'- uGUCCGa---GUCCGGGUGGCaCCUuuuc -5'
27236 3' -56.2 NC_005832.1 + 75734 0.68 0.698164
Target:  5'- gACAGGCagCAcacugcGGUCCugucugcgGCCGUGGGGAGGu -3'
miRNA:   3'- -UGUCCGa-GU------CCGGG--------UGGCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 78252 0.66 0.806521
Target:  5'- -uGGGUUcCAGGCCaggaACC-UGGGAGAGc -3'
miRNA:   3'- ugUCCGA-GUCCGGg---UGGcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 80109 0.66 0.822659
Target:  5'- -gAGGCUCAGGuacagguccaggagaCCCACgGUaauacuccaccugagGGAAGAGu -3'
miRNA:   3'- ugUCCGAGUCC---------------GGGUGgCA---------------CCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 80277 0.68 0.70851
Target:  5'- cCAGGaCUCuAGGCCCGuguaCGUGGAc--- -3'
miRNA:   3'- uGUCC-GAG-UCCGGGUg---GCACCUuuuc -5'
27236 3' -56.2 NC_005832.1 + 85344 0.71 0.520667
Target:  5'- uCA-GCUCAGaGUCCACCuUGGAAAAGa -3'
miRNA:   3'- uGUcCGAGUC-CGGGUGGcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 90975 0.68 0.718788
Target:  5'- uACAGGUUCGacGGCCUGaCGUGGGuAGAGu -3'
miRNA:   3'- -UGUCCGAGU--CCGGGUgGCACCU-UUUC- -5'
27236 3' -56.2 NC_005832.1 + 94694 0.67 0.749107
Target:  5'- -gAGGCUCGuuaaaCCCGCCGUGGGc--- -3'
miRNA:   3'- ugUCCGAGUcc---GGGUGGCACCUuuuc -5'
27236 3' -56.2 NC_005832.1 + 97144 0.66 0.787953
Target:  5'- -aAGGCUgcGGCagaCGCCGUGGcAAAGa -3'
miRNA:   3'- ugUCCGAguCCGg--GUGGCACCuUUUC- -5'
27236 3' -56.2 NC_005832.1 + 97201 0.67 0.72797
Target:  5'- gACAGGCUCcuggagcAGGCCUcgGCCGUGu----- -3'
miRNA:   3'- -UGUCCGAG-------UCCGGG--UGGCACcuuuuc -5'
27236 3' -56.2 NC_005832.1 + 98181 1.08 0.002045
Target:  5'- gACAGGCUCAGGCCCACCGUGGAAAAGc -3'
miRNA:   3'- -UGUCCGAGUCCGGGUGGCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 102062 0.66 0.821777
Target:  5'- gGCAuGGCUCAGGagacgguaacaccgUCCGCCaUGGAGGc- -3'
miRNA:   3'- -UGU-CCGAGUCC--------------GGGUGGcACCUUUuc -5'
27236 3' -56.2 NC_005832.1 + 104857 0.67 0.753081
Target:  5'- -aGGGUUCAGGuagagugucccaaaaCCC-CCGUGGAGuGGa -3'
miRNA:   3'- ugUCCGAGUCC---------------GGGuGGCACCUUuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.