miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27238 3' -57 NC_005832.1 + 101682 1.12 0.001039
Target:  5'- gGCCCCGUCAACGCAGACUCUCCUCCCc -3'
miRNA:   3'- -CGGGGCAGUUGCGUCUGAGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 32541 0.74 0.372326
Target:  5'- gGUCCCGUUGACGUuGAUggUCCUCCUg -3'
miRNA:   3'- -CGGGGCAGUUGCGuCUGagAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 65226 0.73 0.406035
Target:  5'- -gCCCGUCGACagGUGGACUCUCaacggUCCCc -3'
miRNA:   3'- cgGGGCAGUUG--CGUCUGAGAGg----AGGG- -5'
27238 3' -57 NC_005832.1 + 59222 0.72 0.450763
Target:  5'- aGCCCgGUCAcUGC--GCUCUCCacUCCCa -3'
miRNA:   3'- -CGGGgCAGUuGCGucUGAGAGG--AGGG- -5'
27238 3' -57 NC_005832.1 + 1915 0.72 0.478861
Target:  5'- aGCCCCGUCuAC-CAGAUgagcagcaUCCUCCUc -3'
miRNA:   3'- -CGGGGCAGuUGcGUCUGag------AGGAGGG- -5'
27238 3' -57 NC_005832.1 + 68708 0.72 0.488417
Target:  5'- uGCaUCCGUCAcCGCAcGGCguuuUCUCCUUCCa -3'
miRNA:   3'- -CG-GGGCAGUuGCGU-CUG----AGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 22794 0.71 0.547456
Target:  5'- uCCCCGUUGACGCcaaaauCUuucuaaacaCUCCUCCCg -3'
miRNA:   3'- cGGGGCAGUUGCGucu---GA---------GAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 20846 0.71 0.557531
Target:  5'- aGCCaCCGUguACGcCAGggcggccucguACUCUgCUCCCg -3'
miRNA:   3'- -CGG-GGCAguUGC-GUC-----------UGAGAgGAGGG- -5'
27238 3' -57 NC_005832.1 + 94904 0.7 0.577833
Target:  5'- gGCCgCGUCGgcccucGCGCAGAUcCUCCugggccugcagUCCCu -3'
miRNA:   3'- -CGGgGCAGU------UGCGUCUGaGAGG-----------AGGG- -5'
27238 3' -57 NC_005832.1 + 32501 0.7 0.588046
Target:  5'- gGCCCUacgCgGGCGCAauGGCUC-CCUCCCa -3'
miRNA:   3'- -CGGGGca-G-UUGCGU--CUGAGaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 10466 0.7 0.588046
Target:  5'- uCCCUGc---CGguGGCUCUCCUCCa -3'
miRNA:   3'- cGGGGCaguuGCguCUGAGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 101851 0.7 0.608562
Target:  5'- aGCUUC-UCAACgGCAGACUCuUUCUCCUc -3'
miRNA:   3'- -CGGGGcAGUUG-CGUCUGAG-AGGAGGG- -5'
27238 3' -57 NC_005832.1 + 71920 0.7 0.61885
Target:  5'- uCCCCc-CAACGUGucUUCUCCUCCCa -3'
miRNA:   3'- cGGGGcaGUUGCGUcuGAGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 64216 0.7 0.618851
Target:  5'- gGCUCUGUCAAgGCcGAcCUCUgCUCCa -3'
miRNA:   3'- -CGGGGCAGUUgCGuCU-GAGAgGAGGg -5'
27238 3' -57 NC_005832.1 + 47608 0.69 0.629149
Target:  5'- -gCCCGUCAG-GCAGAgCUCcUCUUCCa -3'
miRNA:   3'- cgGGGCAGUUgCGUCU-GAG-AGGAGGg -5'
27238 3' -57 NC_005832.1 + 21209 0.69 0.63945
Target:  5'- gGCCCCGgCAAUcacCAG-C-CUCCUCCCc -3'
miRNA:   3'- -CGGGGCaGUUGc--GUCuGaGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 97028 0.69 0.649745
Target:  5'- aGUCCuaCGUgGugGCGGAC-CUggCCUCCCa -3'
miRNA:   3'- -CGGG--GCAgUugCGUCUGaGA--GGAGGG- -5'
27238 3' -57 NC_005832.1 + 81590 0.69 0.660026
Target:  5'- gGCCCUGUauauuauuACGCccGACUCUCUcacaUCCCc -3'
miRNA:   3'- -CGGGGCAgu------UGCGu-CUGAGAGG----AGGG- -5'
27238 3' -57 NC_005832.1 + 39284 0.69 0.670284
Target:  5'- gGCCCCGcgGGCGCAGACggagUCCacgUCCa -3'
miRNA:   3'- -CGGGGCagUUGCGUCUGag--AGGa--GGG- -5'
27238 3' -57 NC_005832.1 + 21176 0.69 0.670284
Target:  5'- uGUCCUGaUGACaGCAGACUCUCCaaaggCCUu -3'
miRNA:   3'- -CGGGGCaGUUG-CGUCUGAGAGGa----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.