miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27238 3' -57 NC_005832.1 + 1915 0.72 0.478861
Target:  5'- aGCCCCGUCuAC-CAGAUgagcagcaUCCUCCUc -3'
miRNA:   3'- -CGGGGCAGuUGcGUCUGag------AGGAGGG- -5'
27238 3' -57 NC_005832.1 + 5119 0.68 0.710913
Target:  5'- aCCCUGUCcACGuCAGAgUC-CCUCaCCc -3'
miRNA:   3'- cGGGGCAGuUGC-GUCUgAGaGGAG-GG- -5'
27238 3' -57 NC_005832.1 + 6812 0.66 0.797443
Target:  5'- cCCCCGUCuaucuccuuACcCGGcCUCgacCCUCCCa -3'
miRNA:   3'- cGGGGCAGu--------UGcGUCuGAGa--GGAGGG- -5'
27238 3' -57 NC_005832.1 + 7107 0.66 0.823894
Target:  5'- uCCCCGgcggugacCAGCGUagaggAGGCUUcCCUCCUg -3'
miRNA:   3'- cGGGGCa-------GUUGCG-----UCUGAGaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 8315 0.68 0.720924
Target:  5'- cGCUCCGgcucCGGCGCAGuGCUCagUUUCCg -3'
miRNA:   3'- -CGGGGCa---GUUGCGUC-UGAGagGAGGG- -5'
27238 3' -57 NC_005832.1 + 10466 0.7 0.588046
Target:  5'- uCCCUGc---CGguGGCUCUCCUCCa -3'
miRNA:   3'- cGGGGCaguuGCguCUGAGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 12147 0.68 0.690698
Target:  5'- cCCCCGUCA----AGACUCcUCCggCCCa -3'
miRNA:   3'- cGGGGCAGUugcgUCUGAG-AGGa-GGG- -5'
27238 3' -57 NC_005832.1 + 13720 0.66 0.823894
Target:  5'- aGUCCCGUCuuccCGgGGACggucauugCUCUucuUCCCa -3'
miRNA:   3'- -CGGGGCAGuu--GCgUCUGa-------GAGG---AGGG- -5'
27238 3' -57 NC_005832.1 + 13786 0.67 0.740705
Target:  5'- -gCCCGUUAuccUGUAGGCgg-CCUCCCu -3'
miRNA:   3'- cgGGGCAGUu--GCGUCUGagaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 14106 0.66 0.823894
Target:  5'- gGCaCCCGUCG----AGACUCUUgUCCUg -3'
miRNA:   3'- -CG-GGGCAGUugcgUCUGAGAGgAGGG- -5'
27238 3' -57 NC_005832.1 + 15634 0.68 0.710913
Target:  5'- uGCUCggUGUCGGaGCAGACgaugcgCUCCUCCg -3'
miRNA:   3'- -CGGG--GCAGUUgCGUCUGa-----GAGGAGGg -5'
27238 3' -57 NC_005832.1 + 20846 0.71 0.557531
Target:  5'- aGCCaCCGUguACGcCAGggcggccucguACUCUgCUCCCg -3'
miRNA:   3'- -CGG-GGCAguUGC-GUC-----------UGAGAgGAGGG- -5'
27238 3' -57 NC_005832.1 + 21112 0.66 0.832368
Target:  5'- cGCCCCGgc--CGUccuGACUgaCCUCCUg -3'
miRNA:   3'- -CGGGGCaguuGCGu--CUGAgaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 21176 0.69 0.670284
Target:  5'- uGUCCUGaUGACaGCAGACUCUCCaaaggCCUu -3'
miRNA:   3'- -CGGGGCaGUUG-CGUCUGAGAGGa----GGG- -5'
27238 3' -57 NC_005832.1 + 21209 0.69 0.63945
Target:  5'- gGCCCCGgCAAUcacCAG-C-CUCCUCCCc -3'
miRNA:   3'- -CGGGGCaGUUGc--GUCuGaGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 21424 0.68 0.730858
Target:  5'- uUCUCGagGGCGUccaGGAgCUUUCCUCCCa -3'
miRNA:   3'- cGGGGCagUUGCG---UCU-GAGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 22794 0.71 0.547456
Target:  5'- uCCCCGUUGACGCcaaaauCUuucuaaacaCUCCUCCCg -3'
miRNA:   3'- cGGGGCAGUUGCGucu---GA---------GAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 25315 0.66 0.797443
Target:  5'- uGCCUuaaaGUCGuC-CAGGCUCUCCaCCCu -3'
miRNA:   3'- -CGGGg---CAGUuGcGUCUGAGAGGaGGG- -5'
27238 3' -57 NC_005832.1 + 27679 0.66 0.815243
Target:  5'- gGCCUCGaaggugucuUCGA-GCAGGCUCUCC-CUg -3'
miRNA:   3'- -CGGGGC---------AGUUgCGUCUGAGAGGaGGg -5'
27238 3' -57 NC_005832.1 + 27891 0.66 0.815243
Target:  5'- cCCCUGUgGuCGUAGACUgCguccCCUCCUa -3'
miRNA:   3'- cGGGGCAgUuGCGUCUGA-Ga---GGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.