miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27298 5' -43.3 NC_005856.1 + 48367 1.11 0.02286
Target:  5'- uUACGGACACAAAAAUACCGCAAUAUCg -3'
miRNA:   3'- -AUGCCUGUGUUUUUAUGGCGUUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 26175 0.76 0.936234
Target:  5'- aACGGACuCGAAAAgACCGCcgGAUAUCc -3'
miRNA:   3'- aUGCCUGuGUUUUUaUGGCG--UUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 81968 0.72 0.994515
Target:  5'- -cUGGAUACAgauccuGAAAUGCUGguGUAUCa -3'
miRNA:   3'- auGCCUGUGU------UUUUAUGGCguUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 15019 0.71 0.997297
Target:  5'- -uCGGugGCAAAGAUAgCGCGAc--- -3'
miRNA:   3'- auGCCugUGUUUUUAUgGCGUUauag -5'
27298 5' -43.3 NC_005856.1 + 70444 0.7 0.998131
Target:  5'- aACGG-CGCAaaggcagGAAGUGCUGCAAUGg- -3'
miRNA:   3'- aUGCCuGUGU-------UUUUAUGGCGUUAUag -5'
27298 5' -43.3 NC_005856.1 + 17706 0.7 0.999026
Target:  5'- cGCGGugGCGAucGUGCUGUAAa--- -3'
miRNA:   3'- aUGCCugUGUUuuUAUGGCGUUauag -5'
27298 5' -43.3 NC_005856.1 + 48225 0.7 0.999026
Target:  5'- gUGCGGACaaccGCAGAuuuccGAUAUUGCGGUAUUu -3'
miRNA:   3'- -AUGCCUG----UGUUU-----UUAUGGCGUUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 56107 0.69 0.999514
Target:  5'- aUGCGGugAUA-----GCCGCAuUGUCa -3'
miRNA:   3'- -AUGCCugUGUuuuuaUGGCGUuAUAG- -5'
27298 5' -43.3 NC_005856.1 + 58518 0.69 0.999514
Target:  5'- aGCGGugGCAuuaucaGAGAUACCcGCAAa--- -3'
miRNA:   3'- aUGCCugUGU------UUUUAUGG-CGUUauag -5'
27298 5' -43.3 NC_005856.1 + 32681 0.68 0.99987
Target:  5'- gUACGGGCGCAugGGcACCGCu----- -3'
miRNA:   3'- -AUGCCUGUGUuuUUaUGGCGuuauag -5'
27298 5' -43.3 NC_005856.1 + 30768 0.68 0.99987
Target:  5'- uUGCGcGGCGCAAcggucagauauuGGAU-CCGCGAUGUUc -3'
miRNA:   3'- -AUGC-CUGUGUU------------UUUAuGGCGUUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 36050 0.68 0.99987
Target:  5'- gUACGGGCGCAugGGcACCGCu----- -3'
miRNA:   3'- -AUGCCUGUGUuuUUaUGGCGuuauag -5'
27298 5' -43.3 NC_005856.1 + 90687 0.68 0.99987
Target:  5'- aGCGGAaaaACAAAgaguuAAUGCCGU--UGUCa -3'
miRNA:   3'- aUGCCUg--UGUUU-----UUAUGGCGuuAUAG- -5'
27298 5' -43.3 NC_005856.1 + 71841 0.68 0.999903
Target:  5'- aUGCGaGAUACcguugcaucGAGAAUGCUGgCGAUAUCu -3'
miRNA:   3'- -AUGC-CUGUG---------UUUUUAUGGC-GUUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 91429 0.68 0.999903
Target:  5'- aACGGGCcgccagccgccGCGcuGAUGCCGCAuUGUg -3'
miRNA:   3'- aUGCCUG-----------UGUuuUUAUGGCGUuAUAg -5'
27298 5' -43.3 NC_005856.1 + 52845 0.67 0.999966
Target:  5'- cUugGGACAUAAAAagcugaacccgacacAUAUUGCuauGUAUCg -3'
miRNA:   3'- -AugCCUGUGUUUU---------------UAUGGCGu--UAUAG- -5'
27298 5' -43.3 NC_005856.1 + 60961 0.66 0.99998
Target:  5'- cGCGGAgUGCcAAAAUACCGgGAUcgCu -3'
miRNA:   3'- aUGCCU-GUGuUUUUAUGGCgUUAuaG- -5'
27298 5' -43.3 NC_005856.1 + 2201 0.66 0.99998
Target:  5'- aUGCgGGAUACucucg-ACCGCcGUAUCg -3'
miRNA:   3'- -AUG-CCUGUGuuuuuaUGGCGuUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 73253 0.66 0.99998
Target:  5'- gACGGACGCc--GGUGCCaGCAAc--- -3'
miRNA:   3'- aUGCCUGUGuuuUUAUGG-CGUUauag -5'
27298 5' -43.3 NC_005856.1 + 89771 0.66 0.999986
Target:  5'- gACuGGCACAGagGAAUugCGUaAAUGUCa -3'
miRNA:   3'- aUGcCUGUGUU--UUUAugGCG-UUAUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.