miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27298 5' -43.3 NC_005856.1 + 91429 0.68 0.999903
Target:  5'- aACGGGCcgccagccgccGCGcuGAUGCCGCAuUGUg -3'
miRNA:   3'- aUGCCUG-----------UGUuuUUAUGGCGUuAUAg -5'
27298 5' -43.3 NC_005856.1 + 52845 0.67 0.999966
Target:  5'- cUugGGACAUAAAAagcugaacccgacacAUAUUGCuauGUAUCg -3'
miRNA:   3'- -AugCCUGUGUUUU---------------UAUGGCGu--UAUAG- -5'
27298 5' -43.3 NC_005856.1 + 73253 0.66 0.99998
Target:  5'- gACGGACGCc--GGUGCCaGCAAc--- -3'
miRNA:   3'- aUGCCUGUGuuuUUAUGG-CGUUauag -5'
27298 5' -43.3 NC_005856.1 + 2201 0.66 0.99998
Target:  5'- aUGCgGGAUACucucg-ACCGCcGUAUCg -3'
miRNA:   3'- -AUG-CCUGUGuuuuuaUGGCGuUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 67395 0.66 0.999986
Target:  5'- aGCGGuACACAAc-AUGCUGCAAc--- -3'
miRNA:   3'- aUGCC-UGUGUUuuUAUGGCGUUauag -5'
27298 5' -43.3 NC_005856.1 + 23206 0.66 0.999993
Target:  5'- uUACGGcagugagaGCAGAGAUAgCGCuGAUGUCc -3'
miRNA:   3'- -AUGCCug------UGUUUUUAUgGCG-UUAUAG- -5'
27298 5' -43.3 NC_005856.1 + 26175 0.76 0.936234
Target:  5'- aACGGACuCGAAAAgACCGCcgGAUAUCc -3'
miRNA:   3'- aUGCCUGuGUUUUUaUGGCG--UUAUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.