Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27301 | 3' | -50.6 | NC_005856.1 | + | 74731 | 0.68 | 0.936414 |
Target: 5'- cCCAGCACauagaACCGGUAUCccGGGCuAUCu- -3' miRNA: 3'- -GGUCGUG-----UGGUCGUAG--UUCGuUAGcg -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 2121 | 0.69 | 0.885711 |
Target: 5'- -aGGCA-GCCAGagaaCGAGCGAUCGCu -3' miRNA: 3'- ggUCGUgUGGUCgua-GUUCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 27005 | 0.7 | 0.870371 |
Target: 5'- gCGGCGCACCAGUAccgGAGCcGUCa- -3' miRNA: 3'- gGUCGUGUGGUCGUag-UUCGuUAGcg -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 14813 | 0.7 | 0.870371 |
Target: 5'- -uGGCA-ACCAGCucAUCGuAGCGAUCGUg -3' miRNA: 3'- ggUCGUgUGGUCG--UAGU-UCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 11943 | 0.7 | 0.844664 |
Target: 5'- aCCGGCACAaucgUAGUAUUGgccuacacgccauAGCGAUCGCc -3' miRNA: 3'- -GGUCGUGUg---GUCGUAGU-------------UCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 57013 | 0.71 | 0.836789 |
Target: 5'- cUCAGaguCACCGGCAUCAAuCGuGUCGCc -3' miRNA: 3'- -GGUCgu-GUGGUCGUAGUUcGU-UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 27908 | 0.71 | 0.827834 |
Target: 5'- aCCAGCAgAUCAGCcagguggCGAGCug-CGCc -3' miRNA: 3'- -GGUCGUgUGGUCGua-----GUUCGuuaGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 86663 | 0.73 | 0.728693 |
Target: 5'- aCGGCACuACCGGCAgUUAAGCcuccAGUUGCc -3' miRNA: 3'- gGUCGUG-UGGUCGU-AGUUCG----UUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 90256 | 0.74 | 0.685702 |
Target: 5'- gCCGGgaGCACCAGCcUUggGUAAUgGCg -3' miRNA: 3'- -GGUCg-UGUGGUCGuAGuuCGUUAgCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 42748 | 0.69 | 0.899324 |
Target: 5'- -uGGCAU-CCAGCuuuUCAAGCAgcuuauuagauguAUCGCu -3' miRNA: 3'- ggUCGUGuGGUCGu--AGUUCGU-------------UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 11378 | 0.69 | 0.900014 |
Target: 5'- cCUGGCuuguuuuCuCCGGCAUUcuGGCGAUCGCa -3' miRNA: 3'- -GGUCGu------GuGGUCGUAGu-UCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 66567 | 0.68 | 0.931036 |
Target: 5'- -gGGUACGCCuu-GUCAGGCAuucaguAUCGCg -3' miRNA: 3'- ggUCGUGUGGucgUAGUUCGU------UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 66179 | 0.68 | 0.931036 |
Target: 5'- uUCAGCcuUACCAGCGUCAAauuuGCGgaugaAUUGCu -3' miRNA: 3'- -GGUCGu-GUGGUCGUAGUU----CGU-----UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 15612 | 0.68 | 0.919452 |
Target: 5'- uCCAGCuuaauuGCACCacggaaAGCAaacCAGGCGcgCGCa -3' miRNA: 3'- -GGUCG------UGUGG------UCGUa--GUUCGUuaGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 62675 | 0.68 | 0.917002 |
Target: 5'- gUCAGCACAcauuuuuaucccuCCAGCAcacaucguuuucccUCcAGCAcacAUCGCg -3' miRNA: 3'- -GGUCGUGU-------------GGUCGU--------------AGuUCGU---UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 89671 | 0.69 | 0.913246 |
Target: 5'- gCCAGuCAUGCCAGCGUgauauUGAGCGugacCGCu -3' miRNA: 3'- -GGUC-GUGUGGUCGUA-----GUUCGUua--GCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 58486 | 0.69 | 0.913246 |
Target: 5'- gCCAGUGCACUugcccacgcuguAGCGauUUGAGCGGUgGCa -3' miRNA: 3'- -GGUCGUGUGG------------UCGU--AGUUCGUUAgCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 64296 | 0.69 | 0.906766 |
Target: 5'- -aAGCGCAUuuaCAGCGuccUCAAGCGauuucguuguaGUCGCg -3' miRNA: 3'- ggUCGUGUG---GUCGU---AGUUCGU-----------UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 57154 | 0.69 | 0.906766 |
Target: 5'- aCGGUugACCAGCGcCgGAGUggUCGg -3' miRNA: 3'- gGUCGugUGGUCGUaG-UUCGuuAGCg -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 50718 | 1.15 | 0.002164 |
Target: 5'- aCCAGCACACCAGCAUCAAGCAAUCGCu -3' miRNA: 3'- -GGUCGUGUGGUCGUAGUUCGUUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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