Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27301 | 3' | -50.6 | NC_005856.1 | + | 91361 | 0.69 | 0.885711 |
Target: 5'- uCCAGCACugACCAGUuauuuUCAcGCuuUCGUu -3' miRNA: 3'- -GGUCGUG--UGGUCGu----AGUuCGuuAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 19473 | 0.71 | 0.836789 |
Target: 5'- uCCAGC-CACCAGC-UC-GGCuuucgaucAUCGCg -3' miRNA: 3'- -GGUCGuGUGGUCGuAGuUCGu-------UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 49763 | 0.71 | 0.809317 |
Target: 5'- aCUGGUuuuaacaaACCAGCAUCAAGUAGcUUGCg -3' miRNA: 3'- -GGUCGug------UGGUCGUAGUUCGUU-AGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 75497 | 0.71 | 0.799775 |
Target: 5'- aCCGGCAcCGCCGaCAaCAGGCuguUCGCg -3' miRNA: 3'- -GGUCGU-GUGGUcGUaGUUCGuu-AGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 64944 | 0.73 | 0.739228 |
Target: 5'- aCAGCACACaCGGCGggCAAGCuauAUCa- -3' miRNA: 3'- gGUCGUGUG-GUCGUa-GUUCGu--UAGcg -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 64086 | 0.73 | 0.718061 |
Target: 5'- gCCAGCACAgCCAGC-----GCAGUUGCc -3' miRNA: 3'- -GGUCGUGU-GGUCGuaguuCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 85839 | 0.73 | 0.707345 |
Target: 5'- gCGGCAUAaaaAGCAUCuuGCGAUCGUa -3' miRNA: 3'- gGUCGUGUgg-UCGUAGuuCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 82827 | 0.74 | 0.65288 |
Target: 5'- gCAGCugGuuGGCAUCAuGC-GUCGCa -3' miRNA: 3'- gGUCGugUggUCGUAGUuCGuUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 8060 | 0.75 | 0.608894 |
Target: 5'- gCCAGCAUccggGCCAGgGUgGAGCAcccauuUCGCa -3' miRNA: 3'- -GGUCGUG----UGGUCgUAgUUCGUu-----AGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 59603 | 0.69 | 0.900014 |
Target: 5'- aCAGCAUugCAGCAcagcauUCGAGaaauaGGUCuGCg -3' miRNA: 3'- gGUCGUGugGUCGU------AGUUCg----UUAG-CG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 61532 | 0.69 | 0.913246 |
Target: 5'- uCCAGCACACaucgaAGCugcCGGGCAAgcCGUu -3' miRNA: 3'- -GGUCGUGUGg----UCGua-GUUCGUUa-GCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 39235 | 0.66 | 0.980649 |
Target: 5'- aCCGGCuuACAUCAGC--UAAGCAaaagucAUUGCu -3' miRNA: 3'- -GGUCG--UGUGGUCGuaGUUCGU------UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 72443 | 0.66 | 0.980649 |
Target: 5'- uCC-GCACGCU-GU-UCAAGCGAUCGa -3' miRNA: 3'- -GGuCGUGUGGuCGuAGUUCGUUAGCg -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 91013 | 0.66 | 0.97647 |
Target: 5'- aUAGCGCGCgCGGCcuuccgcGcuucaacguuaucuaUCAGGUAAUCGCc -3' miRNA: 3'- gGUCGUGUG-GUCG-------U---------------AGUUCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 13432 | 0.67 | 0.963005 |
Target: 5'- aCCAGCgaagACGacgaCAGUgaugauucaAUCAcgcAGCAAUCGCa -3' miRNA: 3'- -GGUCG----UGUg---GUCG---------UAGU---UCGUUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 89421 | 0.67 | 0.95923 |
Target: 5'- gCGGCAgAcuucuuCCGGCAUCAGGUGcaucauGUUGCg -3' miRNA: 3'- gGUCGUgU------GGUCGUAGUUCGU------UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 56216 | 0.67 | 0.95923 |
Target: 5'- gCGGCuauCACC-GCAUUAGGUaaaaucugugcaGAUCGCc -3' miRNA: 3'- gGUCGu--GUGGuCGUAGUUCG------------UUAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 15659 | 0.67 | 0.958839 |
Target: 5'- uCCAGCGCcaguuaugacuccACCAGCuAUCAGGaCAcccUGCg -3' miRNA: 3'- -GGUCGUG-------------UGGUCG-UAGUUC-GUua-GCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 12822 | 0.68 | 0.936414 |
Target: 5'- gCCAuGgACACCAGCcaguAUCGcacAGCGuaacgGUCGCg -3' miRNA: 3'- -GGU-CgUGUGGUCG----UAGU---UCGU-----UAGCG- -5' |
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27301 | 3' | -50.6 | NC_005856.1 | + | 41127 | 0.69 | 0.913246 |
Target: 5'- gUCAGCACGCCucAGC--CGGGCGuuaugCGCa -3' miRNA: 3'- -GGUCGUGUGG--UCGuaGUUCGUua---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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