miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27314 3' -49.2 NC_005856.1 + 1828 0.67 0.983854
Target:  5'- aUCAcUUUAGCAAaaccGCGCCGUgCUUCu -3'
miRNA:   3'- -AGU-AAAUCGUUguuuCGCGGCG-GAGG- -5'
27314 3' -49.2 NC_005856.1 + 2038 0.66 0.989095
Target:  5'- aUCA-UUGGCGGCcauuAG-GCCGCCUUUu -3'
miRNA:   3'- -AGUaAAUCGUUGuu--UCgCGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 2443 0.7 0.921241
Target:  5'- cCAag-AGCAuugGCGAuGCGCCGuuCCUCCg -3'
miRNA:   3'- aGUaaaUCGU---UGUUuCGCGGC--GGAGG- -5'
27314 3' -49.2 NC_005856.1 + 9606 1.13 0.004002
Target:  5'- aUCAUUUAGCAACAAAGCGCCGCCUCCc -3'
miRNA:   3'- -AGUAAAUCGUUGUUUCGCGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 13529 0.68 0.964484
Target:  5'- cCAUugUUGGCuuu--GGCuGCCGCUUCCg -3'
miRNA:   3'- aGUA--AAUCGuuguuUCG-CGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 14158 0.74 0.760529
Target:  5'- -----cGGCGAC---GCGCCGCCUCUu -3'
miRNA:   3'- aguaaaUCGUUGuuuCGCGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 16660 0.7 0.927162
Target:  5'- uUCAUgu-GUGugAuuGUGCCGCCgUCCa -3'
miRNA:   3'- -AGUAaauCGUugUuuCGCGGCGG-AGG- -5'
27314 3' -49.2 NC_005856.1 + 17071 0.69 0.943227
Target:  5'- -----aGGCGGCAuuGGCGgguCCGUCUCCg -3'
miRNA:   3'- aguaaaUCGUUGUu-UCGC---GGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 20819 0.68 0.971167
Target:  5'- ----aUAGC-GCAAAuuGCaCCGCCUCCu -3'
miRNA:   3'- aguaaAUCGuUGUUU--CGcGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 21461 0.66 0.985778
Target:  5'- aUCAUUU-GCAu---GGUGCCGCC-CUg -3'
miRNA:   3'- -AGUAAAuCGUuguuUCGCGGCGGaGG- -5'
27314 3' -49.2 NC_005856.1 + 26619 0.67 0.975272
Target:  5'- aUCAUUggcuGCcGCAuuAAGCGCCGUCagaacauuacgcauaUCCg -3'
miRNA:   3'- -AGUAAau--CGuUGU--UUCGCGGCGG---------------AGG- -5'
27314 3' -49.2 NC_005856.1 + 28813 0.74 0.760529
Target:  5'- uUCAUUgauGCAccauuACuGAGCGUCGCUUCCc -3'
miRNA:   3'- -AGUAAau-CGU-----UGuUUCGCGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 40837 0.7 0.915037
Target:  5'- -uGUUUAGCcACucauauaaacGAGCGCCccagGCCUCCu -3'
miRNA:   3'- agUAAAUCGuUGu---------UUCGCGG----CGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 44868 0.66 0.99051
Target:  5'- uUCAggUGGCAaugcuGCAcGGCGCa-UCUCCa -3'
miRNA:   3'- -AGUaaAUCGU-----UGUuUCGCGgcGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 45760 0.68 0.967949
Target:  5'- gUC-UUUGGCAAaGAAGUcuGCCcCCUCCa -3'
miRNA:   3'- -AGuAAAUCGUUgUUUCG--CGGcGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 48843 0.67 0.979179
Target:  5'- aUCAUgaaauagUUAGCAAUu--GCGCCGgggaUCUCCc -3'
miRNA:   3'- -AGUA-------AAUCGUUGuuuCGCGGC----GGAGG- -5'
27314 3' -49.2 NC_005856.1 + 50238 0.72 0.829138
Target:  5'- aCAgcgAGCAAUucaugggcaAAAGUGCCGCCgCCa -3'
miRNA:   3'- aGUaaaUCGUUG---------UUUCGCGGCGGaGG- -5'
27314 3' -49.2 NC_005856.1 + 54726 0.74 0.759492
Target:  5'- gCAUUUcaucagaagugccAGCAACAAcaaaCGCCGCUUCCa -3'
miRNA:   3'- aGUAAA-------------UCGUUGUUuc--GCGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 60995 0.66 0.985778
Target:  5'- gUCAguagaGGCAAUuuugccAGUGCCGCUUUCg -3'
miRNA:   3'- -AGUaaa--UCGUUGuu----UCGCGGCGGAGG- -5'
27314 3' -49.2 NC_005856.1 + 64193 0.67 0.983854
Target:  5'- -----gAGUGACu--GCGCCGCCaCCu -3'
miRNA:   3'- aguaaaUCGUUGuuuCGCGGCGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.