Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27314 | 3' | -49.2 | NC_005856.1 | + | 9606 | 1.13 | 0.004002 |
Target: 5'- aUCAUUUAGCAACAAAGCGCCGCCUCCc -3' miRNA: 3'- -AGUAAAUCGUUGUUUCGCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 73355 | 0.67 | 0.979422 |
Target: 5'- -----cGGCAauguGCGGGGCGUugguauuaaCGCCUCCc -3' miRNA: 3'- aguaaaUCGU----UGUUUCGCG---------GCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 81145 | 0.67 | 0.979422 |
Target: 5'- -aAUUcGGUAAgGAGGUGCCGCUUUUc -3' miRNA: 3'- agUAAaUCGUUgUUUCGCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 64193 | 0.67 | 0.983854 |
Target: 5'- -----gAGUGACu--GCGCCGCCaCCu -3' miRNA: 3'- aguaaaUCGUUGuuuCGCGGCGGaGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 60995 | 0.66 | 0.985778 |
Target: 5'- gUCAguagaGGCAAUuuugccAGUGCCGCUUUCg -3' miRNA: 3'- -AGUaaa--UCGUUGuu----UCGCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 87877 | 0.66 | 0.989095 |
Target: 5'- gUCAUUUaAGCuGCAAAGUGCUgguGCUUUa -3' miRNA: 3'- -AGUAAA-UCGuUGUUUCGCGG---CGGAGg -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 2038 | 0.66 | 0.989095 |
Target: 5'- aUCA-UUGGCGGCcauuAG-GCCGCCUUUu -3' miRNA: 3'- -AGUaAAUCGUUGuu--UCgCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 44868 | 0.66 | 0.99051 |
Target: 5'- uUCAggUGGCAaugcuGCAcGGCGCa-UCUCCa -3' miRNA: 3'- -AGUaaAUCGU-----UGUuUCGCGgcGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 91278 | 0.66 | 0.991777 |
Target: 5'- uUCAUcgaggcGCAugGAggaaaAGUGCCGCC-CCu -3' miRNA: 3'- -AGUAaau---CGUugUU-----UCGCGGCGGaGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 26619 | 0.67 | 0.975272 |
Target: 5'- aUCAUUggcuGCcGCAuuAAGCGCCGUCagaacauuacgcauaUCCg -3' miRNA: 3'- -AGUAAau--CGuUGU--UUCGCGGCGG---------------AGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 20819 | 0.68 | 0.971167 |
Target: 5'- ----aUAGC-GCAAAuuGCaCCGCCUCCu -3' miRNA: 3'- aguaaAUCGuUGUUU--CGcGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 45760 | 0.68 | 0.967949 |
Target: 5'- gUC-UUUGGCAAaGAAGUcuGCCcCCUCCa -3' miRNA: 3'- -AGuAAAUCGUUgUUUCG--CGGcGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 54726 | 0.74 | 0.759492 |
Target: 5'- gCAUUUcaucagaagugccAGCAACAAcaaaCGCCGCUUCCa -3' miRNA: 3'- aGUAAA-------------UCGUUGUUuc--GCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 14158 | 0.74 | 0.760529 |
Target: 5'- -----cGGCGAC---GCGCCGCCUCUu -3' miRNA: 3'- aguaaaUCGUUGuuuCGCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 28813 | 0.74 | 0.760529 |
Target: 5'- uUCAUUgauGCAccauuACuGAGCGUCGCUUCCc -3' miRNA: 3'- -AGUAAau-CGU-----UGuUUCGCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 83063 | 0.73 | 0.770827 |
Target: 5'- ----aUGGCAuuACuGAGCGCCGUUUCCc -3' miRNA: 3'- aguaaAUCGU--UGuUUCGCGGCGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 87343 | 0.71 | 0.894746 |
Target: 5'- ---aUUGGCAACGAGGUuaCGCUgaUCCg -3' miRNA: 3'- aguaAAUCGUUGUUUCGcgGCGG--AGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 40837 | 0.7 | 0.915037 |
Target: 5'- -uGUUUAGCcACucauauaaacGAGCGCCccagGCCUCCu -3' miRNA: 3'- agUAAAUCGuUGu---------UUCGCGG----CGGAGG- -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 69360 | 0.69 | 0.948021 |
Target: 5'- -gGUUUAGCucaguuggUAGAGCGCCuGCCUUg -3' miRNA: 3'- agUAAAUCGuu------GUUUCGCGG-CGGAGg -5' |
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27314 | 3' | -49.2 | NC_005856.1 | + | 13529 | 0.68 | 0.964484 |
Target: 5'- cCAUugUUGGCuuu--GGCuGCCGCUUCCg -3' miRNA: 3'- aGUA--AAUCGuuguuUCG-CGGCGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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