Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27315 | 5' | -55.5 | NC_005856.1 | + | 54090 | 0.66 | 0.882496 |
Target: 5'- aG-CGUCAC-GCGuUCCGGGauuuGACCa -3' miRNA: 3'- gCgGCAGUGcCGCuAGGCCCau--UUGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 69752 | 0.66 | 0.860123 |
Target: 5'- uGCCgGUUACGGU--UCCGGccAGGCCu -3' miRNA: 3'- gCGG-CAGUGCCGcuAGGCCcaUUUGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 39439 | 0.66 | 0.851431 |
Target: 5'- cCGCCcgGUgAUGGUGAUCUuaaaGGGUAguuuucuGACCu -3' miRNA: 3'- -GCGG--CAgUGCCGCUAGG----CCCAU-------UUGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 79038 | 0.67 | 0.835836 |
Target: 5'- -uCCGUCGC-GCaGGUCUGGGUucuuuGCCa -3' miRNA: 3'- gcGGCAGUGcCG-CUAGGCCCAuu---UGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 77524 | 0.67 | 0.818675 |
Target: 5'- -uCUGaCACGGUGAUgCuGGUGGACCg -3' miRNA: 3'- gcGGCaGUGCCGCUAgGcCCAUUUGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 90913 | 0.67 | 0.815156 |
Target: 5'- gCGCUauGUUGCGuCGGUCCGGGgccgauguucuggAAACCa -3' miRNA: 3'- -GCGG--CAGUGCcGCUAGGCCCa------------UUUGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 21480 | 0.67 | 0.809827 |
Target: 5'- -aUCGUCACGGCGAgcgCCGaucauuugcauGGU--GCCg -3' miRNA: 3'- gcGGCAGUGCCGCUa--GGC-----------CCAuuUGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 29445 | 0.68 | 0.753555 |
Target: 5'- cCGCCGaUCGCGcGCGcgCCGcucUGGGCCa -3' miRNA: 3'- -GCGGC-AGUGC-CGCuaGGCcc-AUUUGG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 88230 | 0.7 | 0.676827 |
Target: 5'- aGCCGcuacgGCGGCcugccgggaaugucuGAUCCGGGUAGGgCa -3' miRNA: 3'- gCGGCag---UGCCG---------------CUAGGCCCAUUUgG- -5' |
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27315 | 5' | -55.5 | NC_005856.1 | + | 11587 | 1.13 | 0.001326 |
Target: 5'- gCGCCGUCACGGCGAUCCGGGUAAACCg -3' miRNA: 3'- -GCGGCAGUGCCGCUAGGCCCAUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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