miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27316 5' -48.1 NC_005856.1 + 2934 0.67 0.99178
Target:  5'- -aACGCCGCCG-CGaUAUGgAAcUCCa -3'
miRNA:   3'- gaUGCGGUGGUaGCaAUGCgUUuAGG- -5'
27316 5' -48.1 NC_005856.1 + 3350 0.79 0.566691
Target:  5'- -cACGCCaggaACCAUCGUUAC-UAAGUCCa -3'
miRNA:   3'- gaUGCGG----UGGUAGCAAUGcGUUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 9171 0.67 0.99178
Target:  5'- --uUGCgAUCAUCGUUAUaGaCGAAUCCa -3'
miRNA:   3'- gauGCGgUGGUAGCAAUG-C-GUUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 9903 0.66 0.996826
Target:  5'- cCUGCG-CACCucaaCGUUAUGCuuGUCa -3'
miRNA:   3'- -GAUGCgGUGGua--GCAAUGCGuuUAGg -5'
27316 5' -48.1 NC_005856.1 + 13576 0.73 0.86518
Target:  5'- aUACGCCGCCAgUUGUUcuucaguaagugGCGCA--UCCu -3'
miRNA:   3'- gAUGCGGUGGU-AGCAA------------UGCGUuuAGG- -5'
27316 5' -48.1 NC_005856.1 + 13983 0.7 0.96815
Target:  5'- uUGCGCCACCG-CGcuggUGgGCAGAUaggCCa -3'
miRNA:   3'- gAUGCGGUGGUaGCa---AUgCGUUUA---GG- -5'
27316 5' -48.1 NC_005856.1 + 14101 0.66 0.997338
Target:  5'- uCUGC-CCACCAgcgCGgugGCGCA-AUCg -3'
miRNA:   3'- -GAUGcGGUGGUa--GCaa-UGCGUuUAGg -5'
27316 5' -48.1 NC_005856.1 + 14164 0.66 0.996826
Target:  5'- -cGCGCCGCC-UCuUUGCGaugggaaucgGAAUCCa -3'
miRNA:   3'- gaUGCGGUGGuAGcAAUGCg---------UUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 14318 0.66 0.997779
Target:  5'- --uUGCCGCCGggcgCGUagccaGCGCAAuggauUCCg -3'
miRNA:   3'- gauGCGGUGGUa---GCAa----UGCGUUu----AGG- -5'
27316 5' -48.1 NC_005856.1 + 16080 0.68 0.989116
Target:  5'- aUACGCCAUUaAUCag-GCGCAuuUCCc -3'
miRNA:   3'- gAUGCGGUGG-UAGcaaUGCGUuuAGG- -5'
27316 5' -48.1 NC_005856.1 + 18747 1.14 0.005443
Target:  5'- aCUACGCCACCAUCGUUACGCAAAUCCu -3'
miRNA:   3'- -GAUGCGGUGGUAGCAAUGCGUUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 19380 0.78 0.655021
Target:  5'- gCUGgGCCACUggCGg-GCGCGAGUCCg -3'
miRNA:   3'- -GAUgCGGUGGuaGCaaUGCGUUUAGG- -5'
27316 5' -48.1 NC_005856.1 + 22875 0.71 0.938657
Target:  5'- -aGCGUCGCCAUCG-UGCGUuca-CCg -3'
miRNA:   3'- gaUGCGGUGGUAGCaAUGCGuuuaGG- -5'
27316 5' -48.1 NC_005856.1 + 26638 0.68 0.987553
Target:  5'- -aGCGCCGUCAgaaCaUUACGCAuAUCCg -3'
miRNA:   3'- gaUGCGGUGGUa--GcAAUGCGUuUAGG- -5'
27316 5' -48.1 NC_005856.1 + 26881 0.68 0.983913
Target:  5'- -aGCGCCAUCAUCGccggugUUAUGCu-GUCg -3'
miRNA:   3'- gaUGCGGUGGUAGC------AAUGCGuuUAGg -5'
27316 5' -48.1 NC_005856.1 + 28937 0.66 0.997338
Target:  5'- -cGCGCCACCAgugCGaUUGaGCcGAUCa -3'
miRNA:   3'- gaUGCGGUGGUa--GC-AAUgCGuUUAGg -5'
27316 5' -48.1 NC_005856.1 + 29441 0.7 0.961037
Target:  5'- -aGCGCCGCCgAUCGc-GCGCGcg-CCg -3'
miRNA:   3'- gaUGCGGUGG-UAGCaaUGCGUuuaGG- -5'
27316 5' -48.1 NC_005856.1 + 30254 0.7 0.961037
Target:  5'- -aACGCCAucuuUCGUUGUUGCGCGGuugCUg -3'
miRNA:   3'- gaUGCGGU----GGUAGCAAUGCGUUua-GG- -5'
27316 5' -48.1 NC_005856.1 + 32522 0.66 0.995556
Target:  5'- --uCGCCuCCAgggcCGUUACGCGA--CCg -3'
miRNA:   3'- gauGCGGuGGUa---GCAAUGCGUUuaGG- -5'
27316 5' -48.1 NC_005856.1 + 35104 0.71 0.92778
Target:  5'- gUACGCCugACCAUCGgugccaUugGCu-GUCCu -3'
miRNA:   3'- gAUGCGG--UGGUAGCa-----AugCGuuUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.