Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 36209 | 0.66 | 0.995556 |
Target: 5'- --uCGCCuCCAgggcCGUUACGCGA--CCg -3' miRNA: 3'- gauGCGGuGGUa---GCAAUGCGUUuaGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 36992 | 0.75 | 0.802648 |
Target: 5'- uUGCGCUGCCGUCGgcgcggUugGCGu-UCCu -3' miRNA: 3'- gAUGCGGUGGUAGCa-----AugCGUuuAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 37094 | 0.68 | 0.985822 |
Target: 5'- ---aGCCGCCAUUGUUuCGCu-GUCg -3' miRNA: 3'- gaugCGGUGGUAGCAAuGCGuuUAGg -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 38499 | 0.66 | 0.997338 |
Target: 5'- -gGCGgCACUAUUGUgaaaGCAAcgCCu -3' miRNA: 3'- gaUGCgGUGGUAGCAaug-CGUUuaGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 41122 | 0.66 | 0.997779 |
Target: 5'- -cACGCCucaGCCGggCGUUAUGCGcacGGUaCCa -3' miRNA: 3'- gaUGCGG---UGGUa-GCAAUGCGU---UUA-GG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 43344 | 0.66 | 0.995556 |
Target: 5'- -cACGCC-CCAUUaacaacgACGCGAcgCCa -3' miRNA: 3'- gaUGCGGuGGUAGcaa----UGCGUUuaGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 45404 | 0.66 | 0.997338 |
Target: 5'- --cCGCUACCAUCGcgGC-CAacugaauuGAUCCa -3' miRNA: 3'- gauGCGGUGGUAGCaaUGcGU--------UUAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 48959 | 0.68 | 0.989116 |
Target: 5'- uCUGCuGCCACUGUugCGUaACGUAGacGUCCu -3' miRNA: 3'- -GAUG-CGGUGGUA--GCAaUGCGUU--UAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 61997 | 0.88 | 0.215831 |
Target: 5'- --uUGCCGCUAUCGUUcGCGCGAAUCCg -3' miRNA: 3'- gauGCGGUGGUAGCAA-UGCGUUUAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 62122 | 0.72 | 0.902669 |
Target: 5'- -cGCGCUuaaaagcgauACCcUUGUUACGCAAgcGUCCa -3' miRNA: 3'- gaUGCGG----------UGGuAGCAAUGCGUU--UAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 67072 | 0.66 | 0.995556 |
Target: 5'- -cGCGUCGgCGUCGUUGUGCcacUCCg -3' miRNA: 3'- gaUGCGGUgGUAGCAAUGCGuuuAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 68218 | 0.66 | 0.997779 |
Target: 5'- -aACGCCGCUG-CGcgAUGUAAAUCa -3' miRNA: 3'- gaUGCGGUGGUaGCaaUGCGUUUAGg -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 71727 | 0.7 | 0.96815 |
Target: 5'- uUGCuGCCccuGCCAUCc-UGCGCAuAUCCa -3' miRNA: 3'- gAUG-CGG---UGGUAGcaAUGCGUuUAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 73303 | 0.68 | 0.987553 |
Target: 5'- -gACGUUuuUAUCGUUACGCA--UCCc -3' miRNA: 3'- gaUGCGGugGUAGCAAUGCGUuuAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 74780 | 0.67 | 0.9939 |
Target: 5'- -aACGCCGcuCCAUCGcUUACuuauGAGUCCg -3' miRNA: 3'- gaUGCGGU--GGUAGC-AAUGcg--UUUAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 77450 | 0.68 | 0.989116 |
Target: 5'- -cGCGCCGCCAaaagagUAUGCAuuccccaaAAUCCg -3' miRNA: 3'- gaUGCGGUGGUagca--AUGCGU--------UUAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 80132 | 0.66 | 0.996235 |
Target: 5'- -aGCGCCGCaaacuUUGUUGCGCcgcgcgGAGUgCCg -3' miRNA: 3'- gaUGCGGUGgu---AGCAAUGCG------UUUA-GG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 85744 | 0.69 | 0.981815 |
Target: 5'- -aGCGCCGCCcg-GUUACGUcuGUUCu -3' miRNA: 3'- gaUGCGGUGGuagCAAUGCGuuUAGG- -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 88515 | 0.66 | 0.996235 |
Target: 5'- uCUGuCGCCGaCA-CGUUACGUAGAUUg -3' miRNA: 3'- -GAU-GCGGUgGUaGCAAUGCGUUUAGg -5' |
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27316 | 5' | -48.1 | NC_005856.1 | + | 89120 | 0.66 | 0.996826 |
Target: 5'- -cACGCCACCA-----GCGCGucaauUCCa -3' miRNA: 3'- gaUGCGGUGGUagcaaUGCGUuu---AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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